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List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of diffe...1184 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor &ndas...1184 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...e reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github.io/papers/401851.full.pdf1188 days ago
Janggu - Deep learning for Genomics
Janggu is a python package that facilitates deep learning in the context of genomics. The package is freely available under a GPL-3.0 license. Detail tutorial at https://janggu.readthedocs.io/en/latest/ USE cases https://github.com/wkopp/janggu_usecases1181 days ago
2193 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2728 days ago
Awesome perl frameworks, libraries and software - PART 2
...implementation briandfoy/git-github-creator - (Perl) Create a Github repository for your Perl modu...Russian perl6 book typester/github-ircbot-perl - ircbot to...dings for Thrust https://github.com/breach/thrust hotwolf/HS...2536 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3821 days ago
List of bioinformatics open source projects/software.
...iopython.org/wiki/Main_Page Python language toolkit BioRails https://github.com/biorails a data manageme...uk/intact/ molecular interaction database InterMine http://intermine.github.io/intermine.org/ Extensive...3799 days ago
R package for visualising GO enrichment
...n or clustering, where for each gene list we display its behaviour in the experiment alongside with its GO annotations. Links @ http://raivokolde.github.io/GOsummaries/ Lab @ http:/...3982 days ago
3588 days ago
Postdoctoral positions are available at the Faryabi Lab
...n is a plus. More at University of Pennsylvania Pathology and Laboratory Medicine Robert B. Faryabi faryabiPenn@gmail.com http://faryabib.github.io/ How To Apply: email CV a...3171 days ago
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2294 days ago
Genome Informatics Section Lab !
...postdoc and PhD students positions are available. More information and application instructions follow below. More at https://genomeinformatics.github.io/1604 days ago
2306 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
...eds to be aligned in paired read mode. BESST provides a script (https://github.com/ksahlin/BESST/blob/master...call to use BWA-sampe as the paired read alignment pipeline. https://github.com/ksahlin/BESST/blob/master...2166 days ago
678 days ago
Comment on "chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes"
More at https://lakshay-anand.github.io/chromoMap/index.html825 days ago