Results for "assemblies."
Blogs
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de n...2652 days ago
List of genome announcement, notes and reporting journals
...permitted) describing novel data sets from high-throughput analysis of genotypes, phenotypes, gene expression, metabolomes, proteomes or genome assemblies.Standard metrics for data qual...2052 days ago
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Bookmarks
- ...of missing, duplicated and single BUSCO genes within the assembly. HapSolo performs hill climbing to minimize cost over thousands of candidate assemblies. ...
1136 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires...
3053 days ago
- +116 more Bookmarks
Files
Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1964 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...y of errors and comparisons between similar assemblies. SSPACE 3.0 – Scaffoldi...hich can be used as a metric for evaluating assemblies. Fermi 1.1 – WGS de nov...timate tool for resolving repeats in genome assemblies. Arachne 4.6233 – Whole...2730 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-re...2538 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...al, PNAS 108(4): 1513-18, 2011 PubMedCentral Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. Florea et al., PLoS One...3823 days ago
Commercial and public next-gen-seq (NGS) software
...form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies. Broad Institute. Edena - Eden...3563 days ago
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Wire posts
News
- Genome Workbench 2.10.7 is here! New features include added support for local custom BLAST databases and improvements to Tree View. For the full list of features, improv...
2909 days ago
- A new “Download assemblies” button is now available in the Assembly database. This makes it easy to download data for multiple genomes without havin...
2591 days ago
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Opportunity posts
Post-doctoral Research Assistant in Genetics
Post-doctoral Research Assistant in Genetics Camden, North London £31.1K per annum inclusive of London Weighting This is a fixed term post for 36 months. We wish...3666 days ago
Postdoctoral Research Assistant at RVC
This is a fixed term post for 24 months. We wish to recruit a highly motivated, postdoctoral scientist to carry out a BBSRC funded project in the laboratory of Dr. Den...2171 days ago
ResearchLabs posts
Computational Structural Biology Lab IITKGP
The major areas of research: Molecular recognition: Protein-protein, Protein-Nucleic acid and Protein-ligand interactions. Studies on multi-component protein assembli...3274 days ago
Bio-Scripts
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --left /media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_noribo_c...
2171 days ago
- ...tig to /media/urbe/MyPassport/BorisTrinityAssembly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2167 days ago
- +3 more Bio-Scripts
Comments
- Usage Summary Produce help page. Quickly check the software usage and available command line options. $ ./fastANI -h One to One. Compute ANI betwee...
1145 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping to...1381 days ago
- +7 more Comments
