Comment on "A quick guide to Phred scaling"
...score of 20 corresponds to a base call accuracy of 99%. Logarithmic scale: The Phred scale is logarithmic, which means that each...character "!" (33 + 20). In summary, Phred scaling is a logarithmic system for representin...561 days ago
Comment on "Short-read assembly using Spades !"
...ads. If the reads are paired-end, they should be provided in separate files for each read. Run SPAdes: To run SPAdes, open the terminal and navigate to the directory where the...566 days ago
Comment on "Tools for Differential expression analysis"
...q2: This R package is widely used for analyzing RNA-Seq data. It uses a negative binomial distribution to...tial expression analysis of RNA-Seq data. It uses a method based on the negative binomial distribution to...566 days ago
Comment on "Basic command-line to run BLAST"
...ches. This is useful for identifying the function of a newly discovered gene or for understanding the evolutionary relationships between different organisms. BLAST works by breakin...566 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...he results: Interpret the results of the synteny analysis by identifying conserved genomic regions, identifying gene families that have been lost or gained in specific lineages, and...569 days ago
Comment on "Basic command-line to run BLAST"
...ocal searches. Choose the database: BLAST searches can be performed against many different databases,...mportant parameters include the e-value threshold, the word size, and the gap penalties. Perform the...569 days ago
Comment on "Kraken: ultrafast metagenomic sequence classification using exact alignments"
Useful links https://genomics.sschmeier.com/ngs-taxonomic-investigation/index.html935 days ago
Comment on "CrossMap: program for genome coordinates conversion between different assemblies"
https://www.researchgate.net/publication/357925950_FastRemap_A_Tool_for_Quickly_Remapping_Reads_between_Genome_Assemblies976 days ago
1247 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
...easons for picking this individual Ph.D. program. Provide the info regarding your previous scholastic...ering, given that all matter, in terms of the abilities and expertise you gained. All your experiences mus...1366 days ago