Results for "Algorithm Design"
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-...2905 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::Du...nally written by Abigail # Documentation for the algorithm is at # http://theoryx5.uwin...t => 0, fitness => 0 }; } } __DATA__ about algori...2371 days ago
Fill up the form and blast with perl
use WWW::Mechanize; use strict; use warnings; my $mech = WWW::Mechanize->new; my $sequence = 'GCCCGCGGTCTCAGAGA...Blast/'); $mech->submit_form( form_name => 'myForm', fields => { 'Algori...2325 days ago
- ...a0c4-1e27-11e8-8de3-124a69f123c8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Creden...a0c4-1e27-11e8-8de3-124a69f123c8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Creden...ulate FASTA format references BaitDesigner (Picard) Designs oligonucleotide baits for hy...
2075 days ago
Perl script to reverse complement a DNA sequence !
#!/usr/bin/perl -w $DNA = 'ACGGGAGGACGGGAAAATTACTACGGCATTAGC'; print "Here is the starting DNA:\n\n"; print...e complement DNA: WRONG:\n\n"; print "$revcom\n"; print "\nThat was a bad algori...2043 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6 ➜ nu...ectory '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/thermo/basics' make -C design/design_pfunc_utils make[2]: Enterin...
2026 days ago
- ➜ Tools git:(master) ✗ wget https://github.com/samtools/htslib/releases/download/1.9/htsl...4339773/f2f10d8a-8a73-11e8-89f4-07e1d9d77b17?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Creden...4339773/f2f10d8a-8a73-11e8-89f4-07e1d9d77b17?X-Amz-Algori...
2019 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads...Biostats materials ... Biostatistics is an innovative field that involves the design, analysis, and interpretation...1511 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen so...
1215 days ago
Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Brian Bushnell...s. reassemble=t If ecc is enabled, use the reassemble algorithm. pincer=f If ecc is enabled, use the pincer algori...976 days ago
