Tools to detect synteny blocks regions among multiple genomes
...a generic sequence comparison tool for visualizing genome alignments both within and between species. It is intended to help scientists study and analyze synteny, homologous genes and...2625 days ago
List of gene ontology software and tools
...ecific studies by leveraging GO and providing a rich graphical user interface. It is a simple to use tool, specialized for biologists who wish to analyze spectral counting data from s...3725 days ago
Bioinformatics software for biologists in the genomics era
...nsion of the fundamental paradigms under which biologist-friendly software tools are designed and developed to fulfill the needs of biologists to analyze large datasets by using sophi...3802 days ago
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3962 days ago
List of bioinformatics open source projects/software.
...connections with other bioinformatics tools GENtle http://directory.fsf.org/wiki/GENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files...3772 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...areas of Human Health, Agriculture, Livestock and Environment. The pace of sequencing is leading to a data overload and therefore the ability to analyze is much beyond the existing c...3860 days ago
3777 days ago
Structural polymorphism analysis from NGS data
...versity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (N...3964 days ago
EMBO Practical Course, Bioinformatics, large-scale data, at Shenzhen, China
...nto how biological knowledge can be generated from high-throughput sequencing (DNA-Seq, RNA-seq, ChIP-seq) experiments and will illustrate how to analyze such data. The course covers...3932 days ago
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...omics. We also develop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their d...1369 days ago
Bioinformatics -- Understanding of living systems through information science
...f bioinformatics is, it utilizes computers to analyze life. One is example is the g...en read using next-generation sequencers, and analyzed by computers. In bioinformat...bacteria, and so on. The first method used to analyze a genome is comparing it with...3932 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...elopmental genetics in Drosophila, computational techniques for analyzing protein interactions, and helping with the development of algorithms to analyze motion capture data of patien...3931 days ago
2090 days ago
Tags: assemblytics, delta, analyze, alignment, assembly, reference, genome, visualization
2167 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for ...Tags: GEnView, phylogeny, comparative, genomics, software, analyze, genetic, environment, genes
874 days ago
Comment on "Benchmarking Perl Module !"
...call the timethese function to run the benchmark for 100 iterations: timethese(100, { 'MyModule' => \&benchmark_my_module, }); Analyze the results: The timethese fu...431 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such a useful list of synteny identification tools. If anyone interested to analyze synteny at the protein level, they can try this tool https://github.com/thiesgehrmann/proteny2999 days ago