Results for "Average"
Blogs
BBTools for bioinformatician !
...ith multiple threads, because the insert-size average is calculated on a per-thread...cally set "reads" to a level that will give X average coverage (decimal point is al...t=histogram.txt stats.txt will contain the average depth and percent covered of...2285 days ago
- ...# for. It will read a name from standard input and then will print the average # age of everyone with that...st, ask the user for the name print "What name would you like the average age for?"; # Get a lin...
1850 days ago
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Bookmarks
- ...mbe) Centurion predicts the exact centromere locations. For seven yeasts with point centromeres, Centurion predicts most of the centromeres at an average of 5~kb distance from their k...
3020 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...DING:3) Remove trailing low quality or N bases (below quality 3) (TRAILING:3) Scan the read with a 4-base wide sliding window, cutting when the average quality per base drops below...2957 days ago
- +12 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...total of 47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generat...3804 days ago
India's own first drug - from Biocon.
Psoriasis is immune-mediated disease that effects the skin. the Disease on an average affects about 10-20 million Indians and it attacks the immune system of human beings. In generall...3934 days ago
Pages
Monitor running jobs on Linux server
...squo;top’.Now let’s read and understand at each line independently.The first line:top - 23:00:48 up 39 days, 2 user, load average: 0.00, 0.00, 0.00The first li...3635 days ago
Genome Assembly Tools and Software - PART2 !!
...Genome Sequence ErrorsAutoEditor is a tool for correcting sequencing and basecaller errors using sequence assembly and chromatogram data. On average AutoEditor corrects 80% of er...2700 days ago
Top-level pages
- ...y traditional approaches. This has led to the founding of dedicated bioinformatics research groups as well as to a different work practice in the average bioscience laboratory where t...
3962 days ago
Most Commonly used Awk by Bioinformatician
...S="\t"}{print $2,$4,$5}' input.txt show rows between 20th and 80th: awk 'NR>=20&&NR<=80' input.txt > output.txt calculate the average of column 2: awk '{x+=$2}END...3927 days ago
- +8 more Top-level pages
Wire posts
News
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500...3923 days ago
The 8000 years old Tibetian gene mutation !!!
...y has provided insight into how gene mutation around 8,000 years ago helped Tibetans' to survive in the thin air on the Tibetan Plateau, where an average elevation is of 14,800 feet.A...3560 days ago
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Opportunity posts
Internships @ Indian Institute of Science
...mathematical or computational biology at institutions located in its region. Eligibility: Bachelors (3rd or 4th year) and Masters students Average duration: 3 months (could be...3760 days ago
- ...5 at 10.00 a.m. Essential Qualification Ph.d / M.Sc./ M.Phil (Bioinformatics) With 1st division or 60% marks or equivalent overall grade point average with at least two years of re...
3394 days ago
- +10 more Opportunity posts
Video
The Story of You: ENCODE and the human genome
...molecule that makes up our genomes: the DNA double helix. Then, in 2001, scientists wrote down the entire 3-billion letter code contained in the average human genome. Now they're try...3921 days ago
Microbiome - Making better use of bacteria
Bacterial cells outnumber human cells 10-to-1 in the average person. Bacterial genes outnumber human genes 100-to-1. Mayo Clinic and the Center for Individualized Medicine are working...3870 days ago
Bio-Scripts
- ...le 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sym/greg200k-sv2.2.tar | tar xvf - % Total % Received % Xferd Average Speed Time Time Time...
2049 days ago
Bash commandline to install Anaconda !
...s $ mkdir tmp $ cd tmp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time...1570 days ago
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Tags
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI
2137 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical reciprocal similarities....Tags: OrthoANI, improved, algorithm, software, calculating, average, nucleotide, identity, ANI
1986 days ago
Comments
Comment on "Benchmarking Perl Module !"
...e the results: The timethese function will output the results of the benchmark, including the number of iterations, the total time taken, and the average time per iteration. You can u...430 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very important when y...598 days ago
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