Results for "BLAST"
Users
Skills: BLAST2639 days ago
Blogs
Tools to detect synteny blocks regions among multiple genomes
...eate images to show the relationship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2607 days ago
Basic command-line to run BLAST
...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2242 days ago
- +5 more Blogs
Bookmarks
A Brief Bioinformatics Tutorial
...e tutorial is divided in three main parts: In the Sequence part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3634 days ago
YASS :: genomic similarity search tool
...ext format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2922 days ago
- +45 more Bookmarks
Pages
- ...nds of our students, and the career paths of our graduates. Elementary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast, blitz, blaze, flash, blocks....
3918 days ago
Genome Assembly Tools and Software - PART2 !!
...next-generation genomic sequencing data for alignment, assembly, and/or BLAST identification. BugBuilder &...mbler for assembling large genomes in the clouds BEAP 0.6 beta – Blast Extension and Assembly Progra...2683 days ago
- +1 more Pages
Top-level pages
- ...e searches have become readily available through the introduction of PsiBLAST [3]; studying evolutionary a...en TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI–BLAST: a new ge...
3945 days ago
Useful Links for Bioinformaticians
...verview of Sequence Comparison Algorithms in Molecular Bill Pearson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST tutorial Pedestrian guide to...3128 days ago
- +9 more Top-level pages
Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3918 days ago
- ...of it. Large-scale sequence studies requiring BLAST-based analysis produce huge a...mounts of data to be parsed. There are several BLAST parsers are available, but th...arcangiu develope a new and fast fast package "BlaSTorage" to parse and store BLAS...
3887 days ago
- +18 more News
Fun
Bioinformatician become producer/director !!!
...llywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...hai kaun. Algo Banya Apne. MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence...3916 days ago
The Best Bioinformatics / Computational Biology Quotes
...k the cat? (Y/N) Genome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has transposons. It just develops random features. Go watch CINEMA and have BLAST.3718 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3906 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3894 days ago
- +4 more Video
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
...ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...ownload ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...nstead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...1144 days ago
Blast result parser with Perl and Bioperl
...U General Public License. # This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hi...y ($infile,$numHits,$outfile) = @ARGV; print "Parsing the BLAST result ..."; my $in = Bio::S...2912 days ago
- +19 more Bio-Scripts
Tags
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there w...Tags: Convert, BLAST, output, CSV, blastn, megablast
2335 days ago
Understanding BLASTn output format 6 !
BLASTn output format 6 BLASTn maps DNA against DNA, for example gene sequences against a reference genomeblastn -query genes.ffn -subject genome.fna -outfmt 6 BLASTn tabular output format 6 Column headers:qseqid sseqid pident length mismatch gapopen qstart qend sstart send eva...Tags: BLASTn, blast, alignment, output, format, 6
2136 days ago
Comments
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp395 days ago
Comment on "Tools for RNA classification"
...l functional RNA molecules. RNAmmer: RNAmmer is a tool for predicting rRNA genes in genomic sequences. It uses a combination of HMM-based and BLAST-based approaches to identify...418 days ago
- +16 more Comments
