Computer simulation of genetic mechanism !!
...real data. https://github.com/adamewing/bamsurgeon Bayesian Serial SimCoal Bayesian Serial SimCoal, (BayeSSC) is...S BEERS was designed to benchmark RNA-Seq alignment algorithms and also algorithms that aim to reconstruct diff...2986 days ago
Tools and Method for Haplotype phasing !
Huge amounts of genotype data are being produced with rece.../~junliu/plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-backed_phasing_algorithm SHAPE-IT: http://www.gr...1349 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...of selected computer science algorithms important in bioinforma...platform for demonstration of algorithms, since various steps of the...gramming experience. The algorithms demonstrated include two app...g/downloads/bae/BioinformaticsAlgorithmsInExcel.zip One of the best...3715 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative ge...2962 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha heli...used for automatic prediction of trans-membrane (TM) protein structure. While algorithm for identification of TM segm...3956 days ago
Bio++ : C Language libraries for your biological need
C has always been a language that never atte...tly abstract and fluent to describe algorithms and interactions in a wide v...ses like GenBank, EMBL or SwissProt,Algorithms for plotting trees, with sup...lihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree recon...3959 days ago
Genome Assembly Tools and Software - PART2 !!
...s 0.7.7 – A Cycle-Basis Algorithm for Accurate Haplotype Assemb....2.1 – Network Matching Algorithm to Gene AssemblyGeneStitch&nb...e AssemblyIsoLasso is an algorithm to assemble transcripts and e...M (Short Reads ASseMbly) algorithm is designed for DNA assembly...2697 days ago
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PostDocs positions in computer science in HELSINKI, FINLAND
...ng, including Machine learning, Data mining, Algorithms, Computational Logic, Cloud...are services. Positions are offered in: Algorithm engineering (String Algorithm...methods for infectious disease epidemiology (Bayesian Statistics Group) Probabilist...3905 days ago
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Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this...Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Algorithm Se Program Tak Haan Maine Bh...3930 days ago
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm3890 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-W...2916 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512...ally written by Abigail # Documentation for the algorithm is at # http://theoryx5.uwin...=> 0, fitness => 0 }; } } __DATA__ about algorithm and biology by century c...2383 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
... Yes Yes Bayesian Statistics Yes...s Yes Yes EM Algorithm Yes Ye...3563 days ago