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28 days ago
List of bioinformatics packages for NGS analysis !
...ackage suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor – A plethora of to...1145 days ago
Computer simulation of genetic mechanism !!
...DNA sequences with recombination (inter and intracodon), migration and demography http://code.google.com/p/netrecodon/ OncoSimulR BioConductor package for Forward Genetic S...2978 days ago
3911 days ago
A simple tutorial for a complex ComplexHeatmap
...lexHeatmap (Gu, Eils, and Schlesner (2016)) is an R Programming Language (R Core Team (2020)) package that is currently listed in the Bioconductor package repository. ins...1132 days ago
Which are the best statistical programming languages to study for a bioinformatician?
...Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3954 days ago
A guide for complete R beginners :- Installing R packages
Part of the reason R has become so popular is the vast array of packages available at the cran and bioconductor repositories. In the last few years, the number of packages has grown expo...3360 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
.... Anders and Huber, Genome Biology 11:R106, 2010 Full Text edgeR: a Bioconductor package for differential expr...Online resources The R statistical computing environment includes Bioconductor, a specialized set of tools f...3782 days ago
List of bioinformatics open source projects/software.
...informatics based on the Eclipse Rich Client Platform (RCP). Bioconductor http://www.bioconductor.org/ R (programming language...techniques and reporting results. supraHex An open-source R/Bioconductor package for omics data analys...3759 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...analysis or visualization. All these workflows are implemented in R/Bioconductor. The work ows cover the most.... Note: You need to update to current release versions of R(3.0.2)/ Bioconductor(2.13) to use all the features...3836 days ago
Surrogate Variable Analysis (SVA)
...and improve reproducibility, see (Leek and Storey 2007 PLoS Genetics, 2008 PNAS or Leek et al. 2011 Nat. Reviews Genetics). More at http://www.bioconductor.org/packages/release/bioc/htm...3478 days ago
3951 days ago
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
...application development or must have expertise in programming using either of Perl/Python. 3. Experience in statistical programming using R/Bioconductor/Matlab. 4. Strong concept...3462 days ago
Installing SEVA environment in Conda !
...##################### | 100% bioconductor-iranges | 2.4 MB | #######...##################### | 100% bioconductor-biocins | 62 KB | #######...##################### | 100% bioconductor-xvector | 724 KB | #######...##################### | 100% bioconductor-biostri | 13.8 MB | #######...840 days ago
826 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...D: 26384938 can be read. What's your all-time favourite bioinformatics package, and why? For me, the best bioinformatics package is R/Bioconductor. The reason why I like this p...2365 days ago
3954 days ago
Comment on "R and Bioconductor Tutorial"
R graphics https://bioconductor.org/packages/devel/bioc/vignettes/chromPlot/inst/doc/chromPlot.pdf #chromPlot2017 days ago
Comment on "Generates a genome coverage plot with R"
Tutorial at https://bioconductor.org/packages/devel/bioc/vignettes/CoverageView/inst/doc/CoverageView.pdf2058 days ago