2639 days ago
Tools to detect synteny blocks regions among multiple genomes
...eate images to show the relationship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2607 days ago
Basic command-line to run BLAST
...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2241 days ago
A Brief Bioinformatics Tutorial
...e tutorial is divided in three main parts: In the Sequence part, you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3634 days ago
YASS :: genomic similarity search tool
...ext format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2922 days ago
3918 days ago
Genome Assembly Tools and Software - PART2 !!
...next-generation genomic sequencing data for alignment, assembly, and/or BLAST identification. BugBuilder &...mbler for assembling large genomes in the clouds BEAP 0.6 beta – Blast Extension and Assembly Progra...2683 days ago
3945 days ago
Useful Links for Bioinformaticians
...verview of Sequence Comparison Algorithms in Molecular Bill Pearson talks about Protein Evolution Biological Sequences and Information BLAST HELP MANUAL BLAST tutorial Pedestrian guide to...3128 days ago
3918 days ago
3887 days ago
Bioinformatician become producer/director !!!
...llywood movies, names will be like this.... BLAST : Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jaye...hai kaun. Algo Banya Apne. MOTIF mil gaya. BLASTana FASTAna. Hamari Sequence...3916 days ago
The Best Bioinformatics / Computational Biology Quotes
...k the cat? (Y/N) Genome make very fast, very accurate mistakes. Let's BLAST it. Some genome never has transposons. It just develops random features. Go watch CINEMA and have BLAST.3717 days ago
3906 days ago
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3894 days ago
Install BLAST in Ubuntu/Linux and Window !
...ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation Fir...ownload ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...nstead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi...1144 days ago
Blast result parser with Perl and Bioperl
...U General Public License. # This script will parse a NCBI blastx output file and output the top N hits of each blast search result. # For each hi...y ($infile,$numHits,$outfile) = @ARGV; print "Parsing the BLAST result ..."; my $in = Bio::S...2912 days ago
Tags: Protein, Motif, evolution, Blast, HMM, Dr. R.Sowdhamini, India
3882 days ago
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp395 days ago
Comment on "Tools for RNA classification"
...l functional RNA molecules. RNAmmer: RNAmmer is a tool for predicting rRNA genes in genomic sequences. It uses a combination of HMM-based and BLAST-based approaches to identify...418 days ago