Create random 1000 INDEL in genome !
...efseq simuSNP.simseq.genome.fa -indel_count 1000 -prefix simuINDEL [Sun Jan 10 16:14:00 2021] Starting simuG .. [Sun Jan 10 16:14:00 2021] Check specified options .. Running...1204 days ago
Create random 1000 CNVs in genome !
...-refseq simuINDEL.simseq.genome.fa -cnv_count 100 -prefix simuCNV [Sun Jan 10 16:24:20 2021] Starting simuG .. [Sun Jan 10 16:24:20 2021] Check specified options .. Running...1204 days ago
Create random 5 inversions in genome !
...refseq simuCNV.simseq.genome.fa -inversion_count 5 -prefix simuINV [Sun Jan 10 16:30:40 2021] Starting simuG .. [Sun Jan 10 16:30:40 2021] Check specified options .. Running...1204 days ago
Create random 2 translocations in genome !
...simuINV.simseq.genome.fa -translocation_count 2 -prefix simuTRANS [Sun Jan 10 17:12:58 2021] Starting simuG .. [Sun Jan 10 17:12:58 2021] Check specified options .. Running...1204 days ago
Set up WGD environment using conda !
...ribution. ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of Ks distributions. pre Check and optionally rename CDS fil...1197 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...ecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/...ng CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /us...1197 days ago
Steps to install Conda on Linux !
...) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #Follow the yes/no flags and finish till the end #Check the installation $ conda -...1176 days ago
Parse the NCBI taxonomy database with Perl !
...-namesfile=> "taxdump/names.dmp"); #to check #parseTax('homo_sapiens', 'm...(@lineage) {print $_->scientific_name; print "\n";} my $decision =recheck_class (1974465, "metazoa");...1166 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check if all the required modules have been installed in the system and dow...1154 days ago
1152 days ago