Results for "Chromosomes"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ation of blocks of order within two sets of chromosomes that are being compared with...The genomes may be represented by sequenced chromosomes (pseudomolecules), by draft s...a 'SyntenyView' page displays a diagram of chromosomes with blocks of conserved synt...2615 days ago
Dynamic chromosome breakpoints !!!
...vision and segregation of identical sets of chromosomes into daughter nuclei and nucl...vement gets start and pulled DNA apart, the chromosomes are free to undergo recombina...ers are caused by the loss or gain of whole chromosomes, which affect the copy number...3558 days ago
- +8 more Blogs
Bookmarks
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful fo...
2944 days ago
- ...solutions starting from aligned reads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features of chromosomes, their correlation to genomic...
3010 days ago
- +24 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3873 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...r for Brassicaceae SpeciesKGBassembler (Brassicaceae genome assembler) is a C++ based tool for assembling contigs and/or scaffolds to full chromosomes based on the karyotype maps o...2691 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...ion is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalia...3524 days ago
Software packages for next gen sequence analysis
...ion is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model organism or mammalia...3247 days ago
- +3 more Top-level pages
Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes to chromosomes, which continues EMBL-EBI series of meetings focused on fundamental aspects of chr...3930 days ago
Breaking chromosomes to study cancer !!!
Chromosomes are present in every cell of our body and...rried in genes that are arranged along the chromosomes. There are usually 46 chromosomes in every cell. These chromoso...ranged in some way. This may happen if two chromosomes swap pieces (a reciprocal tra...3584 days ago
Opportunity posts
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
...genomes from primates (e.g., the emergence of new genes and their functions) and other mammals (e.g., the origin and evolution of mammalian sex chromosomes). In the framework of a recen...3924 days ago
ResearchLabs posts
- Complete, accurate replication of the genome is essential for life. All chromosomes in eukaryotic cells must be duplicated and then segregated to daughter cells to ensure genetic integr...
3514 days ago
- ...interested in the mechanisms of species origin from a molecular and ecological perspective. Particularly, we are interested in the role of sex chromosomes in speciation. Most of our re...
3007 days ago
- +3 more ResearchLabs posts
Video
How DNA is Packaged (Advanced)
...ch cell in our body. And a typical cell nucleus is so small that ten thousand could fit on the tip of a needle. It is important to realize that chromosomes are not always present, they...3882 days ago
Bio-Scripts
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %in%...2289 days ago
Plot custom gene density with R
library(karyoploteR) pp2255 days ago
- +3 more Bio-Scripts
Tags
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located on the non recombining part of sex chromosomes). How does SEX-DETector work? SEX-DETector does not require prior sequencing of ...Tags: SEX-DETector, Probabilistic, Approach, Study, Sex, Chromosomes, Non-Model, Organisms
2172 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addit...Tags: chromoMap, R, package, Interactive, Visualization, Annotation, Chromosomes
1855 days ago
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Comments
Comment on "Biological databases !"
Chromosomes here https://hgdownload.cse.ucsc.edu/goldenpath/hg38/chromosomes/1548 days ago
Comment on "RACA: Reference-Assisted Chromosome Assembly"
Chromosomer – a reference-based genome arrangement tool, which rapidly builds chromosomes from genome contigs or scaffolds using their alignments to a reference genome of a closel...2776 days ago
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