Results for "Construction"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...to be an efficient and accurate automated tool for defining HSBs using datasets that may contain minor errors resulting from limitations in map construction methodologies. CoGe (http://...2622 days ago
String graph based genome assembly software and tools !
...not rely on de Bruijn graphs, and instead employs a different graph construction approach called ‘string...This paper describes the String Graph concept. ii) Efficient construction of an assembly string graph u...2340 days ago
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Bookmarks
Orione – a web-based framework for NGS analysis in microbiology
...sity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines th...3586 days ago
- ...tegy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows: For each g...
2657 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...semblySAM employs a novel method to localize and assemble RNA-seq reads into RNA transcript sequences. StringGraph beta – String Graph Construction Using Incremental HashingStri...2697 days ago
Top-level pages
- ...equence alignment, protein 3D structure alignment, phylogenetic tree construction, prediction and classificatio...introduction of PsiBLAST [3]; studying evolutionary aspects, by the construction of phylogenetic trees from th...
3959 days ago
Phylogenetic for Bioinformatics
...mporia.edu/mooredwi/nathist/chap1.htm Algorithms for Phylogenetic Reconstructions:http://lectures.molgen.mpg.d.../teaching/SBseminar/manual.pdf Web sites providing software for the construction of phylogenetic trees BioE...3958 days ago
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Wire posts
Opportunity posts
Structural polymorphism analysis from NGS data
...of the detection of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species and of the construction of pan- and core-genomes. The...3960 days ago
Bioinformatics JRF at IISER MOHALI
...ion and characterization of transcription factors (TFs) from the Arabidopsis shoot apical meristem stem cell niche using genomic approaches and construction of a gene regulatory network...3934 days ago
- +2 more Opportunity posts
Bio-Scripts
- ...- --------------- Inchworm --------------------- -- (Linear contig construction from k-mers) -- ------------...s ------------------------- -- (Contig Clustering & de Bruijn Graph Construction) -- ------------------------...
2139 days ago
Set up WGD environment using conda !
...age and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit a KDE to a Ks distribution. ksd Ks distribution construction. mcl All-vs.-all blastp +...1215 days ago
Tags
Mercator: Multiple Whole-Genome Orthology Map Construction
Whole-genome homology maps attempt to identify the evolutionary relationships between and within multiple genomes. The term "syntenic" is often used to describe regions of multiple genomes that are believed to have evolved from the same region in an ancestral genome. However, it has been pointed ...Tags: Mercator, Multiple, Whole-Genome, Orthology, Map, Construction, orthologous, homologous, paralogous, Synteny, ancetral
1458 days ago
RopeBWT2: Incremental construction of FM-index for DNA sequences
RopeBWT2 is an tool for constructing the FM-index for a collection of DNA sequences. It works by incrementally inserting one or multiple sequences into an existing pseudo-BWT position by position, starting from the end of the sequences. This algorithm can be largely considered a mixture of B...Tags: RopeBWT2, Incremental, construction, FM-index, DNA, sequences
2031 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1256 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny is the latest input in computational synteny halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://a...1442 days ago
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