Results for "Differential"
Users
About me: ...like shotgun sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcriptome assembly, and differential expression analysis, and deve...1154 days ago
Blogs
Computer simulation of genetic mechanism !!
...tasim/index.html RNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...2989 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Stat...2770 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...o Assembly for Illumina Data Introductory tutorial https://docs.google.com/document/pub?id=1N3AB9ptISUu4zULqe1kXpVF0BDyGb5f5yzxWSJd_WNM RNAseq Differential Gene Expression Introductory...3502 days ago
- ...ature Protocols In this tutorial we cover the concepts of RNA-Seq differential gene expression (DGE) analysi...his tutorial we compare the performance of three statistically-based differential expression tools:* CuffDiff*...
3667 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...se the ABySS parallel assembler for de novo transcriptome analysis] Differential expression analysis R-SAP: a...er et al, Nature Biotechnology 30:99 - 104, 2012 Publisher Website Differential gene and transcript expressio...3794 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...3752 days ago
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News
R package for visualising GO enrichment
...word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, whe...3954 days ago
Surrogate Variable Analysis (SVA)
...istics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv). Removing batch effects and using surrogate variables in differential expression analysis have been...3490 days ago
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Opportunity posts
System Biologist at Millennium Software productions India Private Limited
...fication : B.Tech or M.Sc in Bioinformatics Required Skills: 1) Basic knowledge of cell signaling pathways, chemical/enzyme kinetics, and differential equation based modeling appro...3943 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...hout the program. Candidate should have cleared GATE/UGC-CSIR examinations. Applicant should have done basic mathematics courses like calculus, differential equations, numerical analysis...3738 days ago
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ResearchLabs posts
- ...classical gene by gene approaches are required. We combine Work to establish improved quantitative experimental assays (such as microarrays or differential in-gel electrophoresis) and...
3962 days ago
- ...ffects prevalent in higher eukaryotes. We therefore combine work to establish improved quantitative experimental assays, such as microarrays or differential in-gel electrophoresis, and d...
3784 days ago
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Video
May 17, 2013 - Differential Network Analysis
Steve Horvath presents Differential Network Analysis at the UCLA Human Genetics/Biostatistics Network Course3910 days ago
Tags
Tools for Differential expression analysis
apeglm - https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.com/stephens999/ashr, https://cran.r-project.org/web/packages/ashr/index.html consensusDE - https://bioconductor.org/packages/release/bioc/html/consensusDE.html DES...Tags: Differential, expression, analysis, Tools
559 days ago
Comments
Comment on "Tools for Differential expression analysis"
...rs to identify genes that are differentially expressed between two or mo...ools available for performing differential expression analysis, includin...ting variance and testing for differential expression. edgeR: Anoth...an R package that is used for differential expression analysis of RNA-Se...435 days ago
Comment on "Running Trinity on RNA-seq !"
...nce. This is a prerequisite to many other analyses such as examining differentially expressed transcripts among...and account for them in your further data explorations. Perform differential expression analysis. Trinity...2138 days ago
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