1150 days ago
Computer simulation of genetic mechanism !!
...tasim/index.html RNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...2985 days ago
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...NGS supports an extensive workflow for the analysis and visualization of RNA-Seq data. The workflow includes Transcriptome / Genome alignment, Differential expression analysis with Stat...2766 days ago
Next Generation Sequencing (NGS) Tutorials
...o Assembly for Illumina Data Introductory tutorial https://docs.google.com/document/pub?id=1N3AB9ptISUu4zULqe1kXpVF0BDyGb5f5yzxWSJd_WNM RNAseq Differential Gene Expression Introductory...3498 days ago
3663 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...se the ABySS parallel assembler for de novo transcriptome analysis] Differential expression analysis R-SAP: a...er et al, Nature Biotechnology 30:99 - 104, 2012 Publisher Website Differential gene and transcript expressio...3790 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-stranded RNA-Seq dataset...3748 days ago
R package for visualising GO enrichment
...word clouds and arranges them together with figures of experimental data. This allows us to draw informative summary plots for analyses such as differential expression or clustering, whe...3950 days ago
Surrogate Variable Analysis (SVA)
...istics) and (3) removing batch effects with known control probes (Leek 2014 biorXiv). Removing batch effects and using surrogate variables in differential expression analysis have been...3486 days ago
System Biologist at Millennium Software productions India Private Limited
...fication : B.Tech or M.Sc in Bioinformatics Required Skills: 1) Basic knowledge of cell signaling pathways, chemical/enzyme kinetics, and differential equation based modeling appro...3939 days ago
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...hout the program. Candidate should have cleared GATE/UGC-CSIR examinations. Applicant should have done basic mathematics courses like calculus, differential equations, numerical analysis...3734 days ago
3958 days ago
3780 days ago
May 17, 2013 - Differential Network Analysis
Steve Horvath presents Differential Network Analysis at the UCLA Human Genetics/Biostatistics Network Course3906 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.Tags: RNA-Seq, differential, expression, work, flow, DESeq2
996 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor packages. We will start from the FASTQ files, show how these were quantified to the reference transcripts, and prepare gene-level count datasets for downstream analysis. We will perform explo...Tags: RNA-seq, workflow, gene-level, exploratory, analysis, differential, expression
950 days ago
Comment on "Tools for Differential expression analysis"
...rs to identify genes that are differentially expressed between two or mo...ools available for performing differential expression analysis, includin...ting variance and testing for differential expression. edgeR: Anoth...an R package that is used for differential expression analysis of RNA-Se...431 days ago
Comment on "Running Trinity on RNA-seq !"
...nce. This is a prerequisite to many other analyses such as examining differentially expressed transcripts among...and account for them in your further data explorations. Perform differential expression analysis. Trinity...2134 days ago