Results for "Emboss"
Blogs
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/emboss_sixpack/ esl-translate - ht...545 days ago
Bookmarks
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2840 days ago
Top-level pages
List of bioinformatics open source projects/software.
...ologic representation environment caArray https://cabig-stage.nci.nih.gov/community/tools/caArray ontologic representation environment EMBOSS http://emboss.sourceforge.net/ Suite of pa...3758 days ago
Tools for Searching Repeats And Palindromic Sequences
...till reads CGAAGC. The European Molecular Biology Open Software Suite (EMBOSS) includes some basic tools fo...n group Nucleic:repeats). There are many on-line services providing the EMBOSS tools, for example: Wageni...2212 days ago
- +1 more Top-level pages
Wire posts
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->new(); my $alignin = Bio::AlignIO->new(-format => 'emboss',...2650 days ago
Perl script to convert fastq to fasta file
...use strict; use warnings; use Bio::Factory::EMBOSS; my $usage = "perl $0 in...or die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory...ram('seqret'); # $seqret is a Bio::Tools::Run::EMBOSSApplication object $seqret-...2252 days ago
- +1 more Bio-Scripts
Tags
- There are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence need...
Tags: fasta, fastq, convert, sed, awk, seqtk, bioawk, fastx, Emboss, fastq2fasta
2306 days ago
Comments
Comment on "Tools for Sequence translation !"
...ranslate a DNA sequence into its corresponding protein sequence. It supports several genetic codes and can handle multiple sequences at once. EMBOSS Transeq: This is a command-li...422 days ago
