How to install Perl modules manually, using CPAN command, and other quick ways
...a Perl module is not installed, application will display the following error message. In this example, XML...es using CPAN, make sure the cpan command is working. Following are the error message when CPAN module is n...3951 days ago
Five points for bioinformatics software/tools
...orked doc/postdoc!) so you are responsible for troubleshooting your own errors most of the time. We co..., in which you deal GB/TB of data are having maximum chances of getting errors, so please be careful and al...3708 days ago
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GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...p is a novel mapper targeted at aligning long, error-prone third-generation sequen...sp;can handle a wide range of read lengths and error profiles, including: Ill...y important feature for technologies where the error rates and error profiles can...3225 days ago
2152 days ago
Genome Assembly Tools and Software - PART2 !!
...ing gaps, correcting sequence errors and transferring annotation....Correction of Genome Sequence ErrorsAutoEditor is a tool for...g. It also provides tools for error correction, sequence-to-read...aps, corrects the base caller errors and performs additional trim...2686 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 1...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Sal...t evidence of editing or are simply sequencing errors - the authors stand by their...3780 days ago
Update Genome Workbench 2.7.15 released
...ixed Go To Position dialog to give better diagnostics in case of a user error Graphical Sequence View: PDF...oolbar buttons Phylogenetic Tree Builder Tool: improved diagnostics of errors Multiple Alignment View: op...3721 days ago
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Golden Rules of Bioinformatics
All constant are variable. Copy and paste is a genetic error. First solve the problem, then write the code. No matter what goes wrong, it will probably look right. Any simple p...3916 days ago
The Best Bioinformatics / Computational Biology Quotes
...tually have several genomes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank god, my genome just compiled. Error message: "Out of space on gen...3721 days ago
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...count_of_A = 0; $count_of_C = 0; $count_of_G = 0; $count_of_T = 0; $errors = 0; foreach $base (@DN...eq 'G' ) { ++$count_of_G; } else { print "Error - Unknown base: $base\n";...2916 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...($esearch_result =~ m/(.*)/is) { die("ESearch returned an error: $1"); } me...} open( my $OUTFILE, ">" . $param{outputFile} ) or die("Error: Cannot open $param{outputFil...2916 days ago
Comment on "A quick guide to Phred scaling"
.... It is used to quantify the probability of an error in each base call in a sequen...to a 10-fold decrease in the probability of an error. For example, a Phred score o...he Phred score, and p is the probability of an error in the base call. Qualit...416 days ago
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