CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxo...and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both p...1458 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
Supernova generates phased, whole-genome de novo assemblies from a Chromium-prepared library. Please see.... Supernova should be run using 38-56x coverage of the genome.• Somewhat higher...1445 days ago
1392 days ago
Sibelia: A comparative genomics tool
Sibelia: A comparative genomics tool: It assists biologists in analysing the genomic...ts. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of micro...1362 days ago
Caretta – A multiple protein structure alignment and feature extraction suite
Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple struc...vergent protein families which consistently returns accurate alignments with a higher...1244 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being...lize MAF files in an efficient manner from either TCGA sources or any in-house studies as long as the data is in MAF...1239 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For...1235 days ago
880 days ago
A guide to machine learning for biologists
Because of the increasing size and inherent complexity of biological data, there has...some best practises and points to consider when embarking on machine learning studies. There is also discussion of...869 days ago
The complete sequence of a human genome
The completed regions include all centromeric satellite arrays, recent segmental duplications, and the short arms of all five acrocentric chromosomes, unlocking these complex regions of the genome to variational and functional studies.775 days ago