Results for "Identity"
Blogs
BBTools for bioinformatician !
...$ randomreads.sh ref=mutant.fasta out=reads.fq.gz reads=5m length=150 paired adderrors That will create a mutant version of E.coli with 99% identity to the original, and then gen...2285 days ago
Understand Social Media Importance for Researchers With Benefits to the Strategy !
...that your research personality is clearly defined and consistent is valuable, but you also want to make sure you are also wrapping your research identity in with common trends on the...1587 days ago
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Bookmarks
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3643 days ago
- ...type calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection....ning and S R Browning (2013). Improving the accuracy and efficiency of identity-by-descent detection in popul...
2762 days ago
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Top-level pages
- ...ce alignment: whereas protein relationships can be detected at the 20% identity level and below, a correct se...ery difficult, and the homology model will be doubtful. From 40 to 50% identity the models are usually mostly...
3962 days ago
- ...n both medical and non-medical settings and analysis of the impact of genomics on such concepts as race, ethnicity, kinship, individual and group identity, health, disease, and "normal...
3957 days ago
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Wire posts
News
- ...thmetic operations to be handled more efficiently. This can result in significant performance improvements in scalar numerical code. apply(m, 2, identity) is now the same as the matri...
3320 days ago
You can't hide from Genome Hackers
Young computational biologist named Yaniv Erlich shocked the research world by showing it was possible to unmask the identities of people listed in anonymous g...2046 days ago
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Opportunity posts
- ...complete carefully the application form, together with an abstract of at least one of their running projects, a "one-page CV" and a personal Identity Picture (Photo). The appli...
3803 days ago
Project Assistant-II job vacancies in National Institute of Oceanography (NIO Goa)
...opies of certificates & mark lists in proof of qualification (SSC onwards), age, experience and testimonials. Candidates should bring a photo identity proof at the time of registra...3118 days ago
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Bio-Scripts
Blast result parser with Perl and Bioperl
...get the similarity value printf OUT "%.1f" , ($hsp->frac_conserved * 100); print OUT "%\t"; # get the identity value printf OUT "%.1f"...2929 days ago
Create genome scaffolding with Perl
...ields)), -verbose => 0}); } ## calculate percent identity my $qAliSize = $qEnd - $qS...rojOpts->{"pid"}){ # printf(STDERR "Rejecting match '%s' vs '%s': identity (%f) too low\n", #...2323 days ago
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Tags
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI
2137 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical reciprocal similarities....Tags: OrthoANI, improved, algorithm, software, calculating, average, nucleotide, identity, ANI
1986 days ago
Comments
Comment on "Basic command-line to run BLAST"
...can be viewed and downloaded. The results include information about the sequences that matched the query sequence, including the alignment score, identity, and e-value. Overall, B...438 days ago
- ...t length will be ignored --noSplit disable splitting of input sequences during mapping [enabled by default] --perc_identity <value>, --pi <value> threshold for identity [default : 85] -t <value&...
2137 days ago
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