Results for "Ligand"
Blogs
List of motif discovery tools !
...se A comprehensive database of pattern-recognition receptors and their ligands. PatMatch -- a program...ence of tyrosine sulfation sites in protein sequences SuperSite -- Ligand Binding Site Database Look a...2005 days ago
Useful links to therapy, disease, drug and drug-target network data:
...edicted drug targets: a set of 1383 predicted drug targets http://www.biomedcentral.com/1471-2105/8/353/additional/ [25] Protein ligand network: a network of 4208 ligands and ~15000 binding sites htt...1446 days ago
Bookmarks
AutoDock Vina: an open-source program for doing molecular docking.
...plemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Research Institute. It is especially effective for protein-ligand docking. AutoDock 4 is availa...1434 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
...uch as SLURM). Currently, there exist two versions of VirtualFlow, which are tailored to different types of tasks: VFLP: VirtualFlow for Ligand Preparation VFVS : ...1434 days ago
- +3 more Bookmarks
Top-level pages
- ...differences (for example between binding energies of different protein ligands) can be characterized by MD...D structure of the binding site (or the structure of the complex with a ligand) to construct potential drugs...
3959 days ago
List of In-silico Binding Site Prediction Tools
...t pocket induced by a binding ligand(s). Essentially, we use a pur...methods for the prediction of ligand-binding sites have been devel...or the docking of a drug-like ligand and we have so created a data...thods for identifying both 3D ligand binding pockets and individua...3756 days ago
- +2 more Top-level pages
Wire posts
News
SCFBio have developed Sanjeevini
...Sl No. Module name Activity 1 Prepare Protein/DNA Prepares protein/DNA for other modules of Sanjeevini 2 Prepare ligand Prepares ligands for other modules of Sanjeev...2373 days ago
Opportunity posts
Workshop On Molecular Modeling and Dynamics Simulation Analyses
...lar Docking Post-structural Analyses Molecular Dynamics (MD) Simulation Linux Introduction Gromacs Installation MD Simulation of Protein ligand complex Analyses of MD Traj...3605 days ago
Bioinformatics JRF/RA/SRF position at Institute of Cytology and Preventive Oncology (ICPO)
...0 years Junior Research Fellow (One) 16,000 + 30% HRA = Rs. 20800/- Identification of novel inhibitors targeting EGFR using an integrated ligand and structure based approach...3466 days ago
- +5 more Opportunity posts
ResearchLabs posts
- ...inetic Monte Carlo (KMC) scheme to study the flux of antibiotics through porins and efflux systems Setup of protocol to integrate MD results in a ligand-based approach Viral inhib...
3881 days ago
Computational Structural Biology Lab IITKGP
The major areas of research: Molecular recognition: Protein-protein, Protein-Nucleic acid and Protein-ligand interactions. Studies on multi-component protein assemblies and protei...3242 days ago
Fun
Bioinformatician become producer/director !!!
...kiya. NCBI wale Data le jayenge Raju ban gaya Genefinder. Har Ligand jo dock karega. Alignment to...er Hum Apke Genome Mein Rehte Hein Do Sequence Baarah Hit Tera Ligand Chal Gaya Har Din Jo Modelin...3930 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...64;neelam GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patternsBy Neelam...Jha yesterday GSP4PDBwebtoolvisualizesearchexploreprotein-ligandstructuralpatterns gdb...1523 days ago
Tags
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological functions. In this section we include tools that can assist in prediction of interaction sites on protein surface and tools for predicting the structure of the intermolecular complex formed between two or more m...Tags: Binding, Site, Prediction, Protein, Bioinformatics, Interactions, Structure, Ligand, Bind, Tools, Server
2214 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, focusing on free (at least for academic institutes) and/or popular docking tools. AutoDock Stochastic ...Tags: Ligand, Docking, Tools, Software, Protein
2214 days ago
Comments
Comment on "AutoDock Vina: an open-source program for doing molecular docking."
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella. https://ccsb.scripps.edu/adfr/1434 days ago
Comment on "Collection of molecular modelling and drug design related tutorial ..."
Protein-Ligand Docking for Drug Design by Sam Z. Grinter http://web.missouri.edu/~szg4y4/presentation3.pdf3864 days ago
- +1 more Comments
