Results for "MS"
Bio-Scripts
Commands to install conda in Ubuntu !
...ion and use in source and binary forms, with or without modification...ies are subject to the licensing terms located at https: //software...c functions with asymmetric algorithms. No license i s required for...pmath-1.1.0-py37_0 ... installing: msgpack-python-0.6.1-py37hfd86e8...1526 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1457 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...
1230 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1230 days ago
Create random 10000 SNPs in genome !
...map for genomic variants introduced during simulation: simuSNP.refseq2simseq.map.txt Generating refer...file for genomic variants introduced during simulation: simuSNP.refseq2simseq.SNP.vcf [Sun Jan 10 16:05:...1226 days ago
Create random 1000 INDEL in genome !
...it:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000...ntroduced during simulation: simuINDEL.refseq2simseq.map.txt Generating refer...ntroduced during simulation: simuINDEL.refseq2simseq.INDEL.vcf [Sun Jan 10 16...1226 days ago
Create random 1000 CNVs in genome !
...:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genome.fa -cnv_count 100 -p...introduced during simulation: simuCNV.refseq2simseq.map.txt Generating refer...introduced during simulation: simuCNV.refseq2simseq.CNV.vcf [Sun Jan 10 16:2...1226 days ago
Create random 5 inversions in genome !
...it:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome.fa -inversion_count...introduced during simulation: simuINV.refseq2simseq.map.txt Generating refer...introduced during simulation: simuINV.refseq2simseq.inversion.vcf [Sun Jan 1...1226 days ago
Create random 2 translocations in genome !
...it:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -translocation_co...ntroduced during simulation: simuTRANS.refseq2simseq.map.txt Generating refer...ntroduced during simulation: simuTRANS.refseq2simseq.translocation.vcf [Sun J...1226 days ago
Set up WGD environment using conda !
...ng. mix Mixture modeling of Ks distributions. pre Check and optionally rename CDS files. syn Co-linearity analyses. viz Plot histograms/densities (interactively)....1218 days ago
