Basic command-line to run BLAST
...ap float_value] [-xdrop_gap_final float_value] [-searchsp int_value] [-sum_stats bool_value] [-seg SEG_options] [-soft_masking soft_masking] [-matrix matrix_name] [-threshold float_value...2242 days ago
List of motif discovery tools !
...rning Web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. PPISearch -- Protein-Pr...1991 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...elling shifts of environmental conditions over time. The dispersal matrix describing the movement of individuals among sub-populations can be replaced by a connectivity matrix and a reduced dispersal matri...2770 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and single-nuclei RN...1123 days ago
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Awesome perl frameworks, libraries and software - PART 2
...e, Perl oriented client interface to Apache Cassandra. fayland/perl-app-github - App::GitHub CPAN module eserte/cpan-testers-matrix - the code behind matrix.cpantesters.org dnmfarrell/S...2492 days ago
Awesome perl frameworks, libraries and software - PART 4
...mplate language yasuaki/git-doc-ja - Japanese translation of git/Documentation/ xdata-skylark/libskylark - Sketching-based Distributed Matrix Computations for Machine Lear...2492 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...etID files Gene reference file: Ensembl Release 75 Output: covariance matrix for regression models mt...ing factors ex. relatedness Input: sample-to-sample genetic covariance matrix needs to be computed; multipl...2906 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...nical and environmental samples Web service http://taxonomer.iobio.io/ Other d2-tools Word-based (k-tuple) comparison (pairwise dissimilarity matrix using d2S measure) of metatra...2369 days ago
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Sr. Scientist Bioinformatics Vacancies at Indian Institute of Toxicology Research, India
...September 21, 2020 17:30 Hrs IST Last date of Receipt of physical copy of application at CSIR-IITR: Tuesday October 05, 2020 17:30 Hrs IST Pay Matrix Level-12 No. of Post-01 (UR...1340 days ago
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Needleman-Wunsch Algorithm in Perl
...tatement die "usage: $0 \n" unless @ARGV == 4; # get sequences, matrix and gapcost from command line...or any gap my %BLOSUM50 = (); my @aalist = (); # read substitution matrix open in, $smfile; while(){...2903 days ago
2869 days ago
Comment on "RPKM normalization - Perl"
Usage: perl rpkm_script_beta.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm Colum1 in the input matrix is gene name, column 2 to 9 samples with corresponding counts an...2869 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...n.Bio++ Suite contains the following components:bppPars (Optimize a phylogenetic tree according to maximum parsimony).bppDist (Estimate a distance matrix and build a phylogenetic tree...3824 days ago