Results for "NGS READGROUPS GATK FastQ"
Blogs
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor &nda...1153 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS...describes how integrated multi-omics functionality in Strand NGS w...3208 days ago
- +19 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We hav...g technology, the models proposed in DAVI are generic and can be used across different NGS t...1157 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also ad....nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysi...http://www.broadinstitute.org/gatk/ Metagenomics:http://www.nbi...3498 days ago
- +94 more Bookmarks
Files
- DOWNLOAD LINK: https://github.com/BioInf-Wuerzburg/proovread/raw/master/util/blasr-1...fine gapped alignments... 6.07 sec[bwa_aln_core] print alignments... PREPROCESS:Fastq format is recognized[Thu Jun...
2162 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence r...uction Using Incremental HashingStringGraph is a novel, ha...contig sequences (FASTA) and NGS paired-read data (FASTA or FASTQ). The final scaffolds are pro...reads Filtering and ScaffoldingSLIQ , a set of simple linea...2697 days ago
Awesome perl frameworks, libraries and software - PART 2
licheng/gccfilter - gccfilter is a perl filter to colori...mplate-related errors or warnings difficult to sort out. kleni...R-1035955. Any opinions, findings, and conclusions or recommend...azon-MWS - Perl API bindings to Ama...;- version agnostic Perl bindings...e-MtGox - MtGox API bindings f...2505 days ago
Top-level pages
- The completion of the first human genome drafts was just a start of the...“high-throughput next generation sequencing” (HT-NGS)...d up the genomic sequencing projects. In the fast growing HT-NGS t...
3959 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative...ext Compression of DNA sequence reads in FAST..., Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for...Eucalyptus. Sansaloni et al., BMC Proceedings 5(Suppl 7):P54, 2011 Full Text...3790 days ago
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Wire posts
News
NGS course Medical Genomics, scheduled for 17-20 September 2013 in UZ Leuven (Belgium).
This course is open to all students and postdocs and registration for all academic participants is free of charge. To help us in organizing the course, please register...3930 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
New advances in biology are being made at a rapidly increasing pace, largely due to new technologies and a large amount of automation. The advent of Next Generation Sequencing (NGS)...3856 days ago
- +14 more News
Opportunity posts
NGS & Bioinformatics Summit Europe
NGS & Bioinformatics Summit Europe Conference 7th to 8th...rlin, Germany Website: https://www.gtcbio.com/conference/ngse...rson: Kristen Starkey We welcome you to join us at GTC’s NGS &...3960 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a netw...ng a bioinformatician to analyze Next Generation Sequencing (NGS)...matique) which has computational facilities and expertise in NGS d...3960 days ago
- +64 more Opportunity posts
ResearchLabs posts
- GABi Research The major researching fields defined as the GABi scope are described next:...ks Genome structure & base composition Highthroughput data analysis from NGS...
3814 days ago
- We investigate genome evolution across the plant kingdom at different levels of complexity: •DNA sequences (NGS-b...
1226 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1228 days ago
Extract the fastq sequence with range in Perl
use Bio::DB::Fasta; open(POSITIONS,"positions.txt"); while(){ chomp; my ($seqName,$begin,$end) = split(/\s/); my $db = Bio::DB::Fasta->new('allGenomeContacted.fa'); my $seq = $db->seq("$seqName", $begin => $end); print "$seq\n"; } close(POSITIONS);2479 days ago
- +34 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I...3542 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3537 days ago
Groups
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pur...3918 days ago
Metagenomics is the study of genetic material from environmental samples to characterize an...Project: http://www.hmpdacc.org/ Tools: http://bioinformaticssoftwareandtools.co.in/ngs.p...3715 days ago
Tags
how to determine @RG tags from a FastQ header??
i have downloaded sra file and converted into paired end FastQ having following headers: @HWUSI-EAS754_0001:4:1:5605:1034#GCCAT The head and tail of file are as follow Head: ==> ERR042057_1.fastq <==@HWUSI-EAS754_0001:4:1:5605:1034#GCCAATTNACTGTTTCTCTAAAACCTTACAAGAAAAACTAAGCTTCTCTAAACTT...Tags: NGS READGROUPS GATK FastQ
2980 days ago
