Results for "Nanopore"
Blogs
Software and Tools to detect structure variation with long reads !!
...variation caller using third generation sequencing Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs...2605 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
..., and string graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool htt...ttps://documentation.tgac.ac.uk/display/NANOOK/NanoOK NanopolishNanopore analysis and genome assembly...2318 days ago
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Bookmarks
Now time is come to revolutionize amino acid sequencing by Nanopore technology
Amino acid sequencing by Nanopore recognition tunneling method3678 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads w...r profiles, including: Illumina, PacBio and Oxford Nanopore.This is an especially importa...3222 days ago
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Files
- ...nctionality of SPAdes was extended to enable assembly of IonTorrent data, as well as hybrid assembly from short and long reads (PacBio and Oxford Nanopore). In this article we present...
821 days ago
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing t...efence and more. The platform technology uses nanopores to analyse single molecules...ns. With a broad patent portfolio, the Oxford Nanopore pipeline includes biological...3810 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...arginAlign Description: SNV caller, specifically tailored to Oxford Nanopore Reads, written in Python; Pac...n github, example data uses 1000 genomes dataset Input: Output: nanopore Description: UCSC Nanopore...2906 days ago
Genome Assembly Tools and Software - PART1 !!
...iences). NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA system for benchm...by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore flow cell technologies (MinIO...2683 days ago
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Wire posts
News
- ...molecules using the SBX molecular expansion technology. The DNA sequence is then read out as the Xpandomer reporters pass sequentially through a nanopore detector. SBX is a molecular...
3242 days ago
1mb long DNA with Nanopore technology
The first continuous DNA read of more than a million bases (>1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO2326 days ago
Opportunity posts
Bioinformatics jobs at Acrannolife
Acrannolife are looking for skilled Bioinformatics Scientists with a minimum of 2yrs Experience in NGS data analysis including Nanopore Sequencing. This is an opportunity to work on...1285 days ago
Bio-Scripts
- # generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png
2249 days ago
Installing Porechop on Ubuntu !
...on.py -> build/lib/porechop copying porechop/nanopore_read.py -> build/lib/porechop...packages/porechop copying build/lib/porechop/nanopore_read.py -> /home/urbe/anacond...naconda3/lib/python3.6/site-packages/porechop/nanopore_read.py to nanopore_read.cpyt...2103 days ago
Polls
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3194 days ago
Tags
Single molecule Sequencing (SMS)
SMS is now slowly gaining place in sequencing world, more and more scientists now keen to use SMS method to sequence molecules in comparatively less complex protocal and less time. One of most successful so far is SMRT from Pacbio and others will be flood the market soon and may be one day it rep...Tags: Single molecule Sequencing, nanopore, pacbio smrt, DNA
3224 days ago
Comments
- ...Python-based short read simulator that allows users to simulate reads from different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulate differe...
413 days ago
Comment on "Short-read assembly using Spades !"
...rsburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is...418 days ago
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