Tools to detect synteny blocks regions among multiple genomes
...formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.automatizacionysistemas.com/Poster_MapSynteny.pdf One of the best synteny tuto...2624 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3723 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...and can be used across different NGS technologies as well as across different species https://iopscience.iop.org/article/10.1088/2632-2153/ab7e19/pdf...1160 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...orlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github.io/papers/401851.full.pdf1160 days ago
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BioRuby :Ruby packages for biologist
...by related Projects: Project treehttp://rubyforge.org/softwaremap/trove_list.php?form_cat=252 Referencehttp://www.jsbi.org/journal/GIW03/GIW03P191.pdf3961 days ago
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R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse comma...1115 days ago
Download the genome from NCBI using bash script/command
...ent file name wget --input $f #cat $f cd .. done #Reference #ftp://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_Downloading_Genomic_Data.pdf2546 days ago
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Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...597 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf604 days ago