Tools to detect synteny blocks regions among multiple genomes
...formulas, a suitable image of syntenic relationships or physical mapping can be obtained. http://www.automatizacionysistemas.com/Poster_MapSynteny.pdf One of the best synteny tuto...2611 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is...3711 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...and can be used across different NGS technologies as well as across different species https://iopscience.iop.org/article/10.1088/2632-2153/ab7e19/pdf...1147 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...orlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github.io/papers/401851.full.pdf1147 days ago
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BioRuby :Ruby packages for biologist
...by related Projects: Project treehttp://rubyforge.org/softwaremap/trove_list.php?form_cat=252 Referencehttp://www.jsbi.org/journal/GIW03/GIW03P191.pdf3948 days ago
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R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse comma...1102 days ago
Download the genome from NCBI using bash script/command
...ent file name wget --input $f #cat $f cd .. done #Reference #ftp://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_Downloading_Genomic_Data.pdf2533 days ago
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4 positions in high throughput computational metagenomics and systems biology of natural products
The Research and Innovation Centre at the Fondazione Edmund Mach (CRI-FEM) is a major international research institution with strong and expanding research interests in Fruit Genomics, Quality Health and Nutrition of Agricultural Products, Agro-ecosystems Sustainability, Biodiversity and Molecula...Tags: Bioinformatics, Computational Biology, Italy, PDF
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Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average number of reads that covers each base of the reference genome. Estimating the sequencing coverage is very...584 days ago
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf591 days ago