Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1250 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
IEEE Transactions on Knowledge and Data Engineering accepts bioinformatics and algorithms manuscripts https://www.computer.org/csdl/journal/tk1276 days ago
Comment on "URMAP, an ultra-fast read mapper"
...ed following -map. Use "-" (minus sign) to get input from a pipe. If the reads ar...ompressed, the filename must end in .gz. Piped input must be decompressed (you ca...used for mapping or for indexing. PipesTo get input from a pipe, use /dev/stdin...1289 days ago
Comment on "Sibelia: A comparative genomics tool"
..."fine". See also section "Output description" for detailed de...occur exactly once in each input sequence, such blocks are u...There are also optional output files: 1. Sequences file...ectory "circos" inside the output directory. To generate "Circ...1291 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
... mugsy --directory /data/output --prefix mygenomes genome1.f...This example will align three genomes and output a file /data/output/mygenome...lename will be used as the genome name in the output files (eg. genome1 from geno...1291 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...eads. Finally, clean up you working directory by removing the combined fasta file, and re-zipping any unzipped files. Then download the output files to you computer using scp and lo...1343 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...program will also break up contigs/scaffolds at spurious sites to form smaller (b...ou if everything’s ok! in this case, no output is good output, since the on...u did with perfectmap and create an output file called <assembl...1343 days ago
Comment on "List of GOI approved peer reviewed bioinformatics and computational biology journals"
GENOMICS AND COMPUTATIONAL BIOLOGY https://genomicscomputbiol.org/ojs3/GCB/index1350 days ago
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Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
International Journal of Bioinformatics Research and Applications Indexed in Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)1369 days ago