Results for "PhD Program"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda...4.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1161 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2931 days ago
A multilayer perceptron (MLP) neural network in Perl
#!/usr/local/bin/perl -w #################################################### #...================================================= #********** THIS IS THE MAIN PROGRAM ************************** #...2930 days ago
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed unde...cal # The results are tab-deliminated and ready for import into a spreadsheet program for browsing and further anal...2928 days ago
Perl program to implement sliding window !
#!/usr/bin/perl -w my $filename = 'data.txt'; open(my TR, '2928 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE L...le from CPAN. # For usage information, run this program with the flag # -h. requi...-- no title appears If for some reason this program is disrupted during a run, r...
2707 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use D...# longest word we accept # you can use any word list at the end of the program # do the @dictionary initi...2385 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## u...|| ($b1 eq "N") || ($b2 eq "N")) ? " " : "*"); } ############### Program starts here # set default...2322 days ago
Perl script to convert fastq to fasta file
#!/usr/bin/env perl use strict; use warnings; use Bio::Factory::EMBOSS; my...ie $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory->program('seqret'); # $seqret is a Bio...2265 days ago
Perl script to find coding regions in DNA sequences
#!/usr/bin/perl -w use strict; # if the number of input arguments is lower...og(1/64); $i = $i + 1; } printf "%.2f\n",$r; __END__ To test the program, save this two files in your...2169 days ago
