Results for "Polymeric scaffold based optoelectronic materials"
Bio-Scripts
Extracting FASTA sequences based on position with perl script !!
#!/usr/bin/env perl #Uses: perl sub-seq.pl input.txt range use strict; use warnings; my $end = pop; my $start = pop; local $/ = '>'; while () {...2634 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usag...RSION = "1.00"; =head1 NAME psl_scaffolder.pl - use self-mapped PSL file to scaff...query sequences "prefix" => "psl_scaffold_", #...for (my $i = 0; $i {"prefix"}, $nextScaffoldI...2321 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_me....00% reads discarded as likely aberrant based on coverage profiles. 0 / 16...seq-Trinity-v2.6.6/util/support_scripts/scaffold_iworm...-v2.6.6/trinity_out_dir/chrysalis/iworm_scaffolds...
2140 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./...Filter used in current 1000 Genomes data Filters based on align..."chr1" or "1"). "from" and "to" are 1-based...
2139 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...assembly using three kinds of metrics: 1. sequence based (if --assembly is given) 2. read mapping based (if...
2136 days ago
Installing Porechop on Ubuntu !
➜ Tools git:(master) ✗ git clone https://github.com/rrwick/Porechop.git Cloning into 'Po..., the format will be chosen based on the o...code binning settings: Control the binning of reads based on...2119 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitut...m (Picard) Creates a hash code based on the read groups (RG)....s from a SAM or BAM file. CollectBaseDistributi...iles into a single file. PositionBasedDown...
2088 days ago
Perl script to break the contigs by 'N'
#!/usr/bin/perl -w use Bio::SeqIO; use strict; my $fasta = Bio::SeqIO->new( -file => "$ARGV...$seq = uc $seq; #now all bases are in uppercase #Searches for NNNNN regions (scaffold...2075 days ago
Bash script to alignment of short reads against reference genome !
bwa mem -t 40 -R '@RG\tID:K12\tSM:K12' \ E.coli_K12_MG1655.fa SRR1770413_1.fastq.gz SRR177041...bam SRR1770413.bam --- this marks reads which appear to be redundant PCR duplicates based on...1572 days ago
Installing ggplot2 and its dependencies on Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads/MitoHunter/minidot/bin$ sudo R [sudo] password for jit: R...equired CPPFLAGS, LDFLAGS, and LIBS... done checking whether we may build an ICU4C-based pro...1563 days ago
