Results for "Run"
Users
About me: ...s of data by 2025 – more than Twitter, Youtube and astronomy combined. In fact, it would take all the CPUs in every cloud and more than 200 days to run genome analysis. "660 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...s a bioinformatics programmer, and crunchy data analyser you need to...2.36Build the perl module: Build by running Makefile.PL, remember the...rescue. Dont worry biological data cruncher, this is true we are now...settings.# cpanSorry, we have to rerun the configuration dialog for...3950 days ago
Five points for bioinformatics software/tools
...ical programmers who believe in open sharing of knowledge. They come under Open Bioinformatics Foundation or O|B|F which is a non-profit, volunteer run organization focused on suppo...3707 days ago
- +21 more Blogs
Bookmarks
- ...for human (or similar) data. The master branch is configured for WGS data; there is an exome branch configured for variant calling in exome data.To run the pipeline you will need Ru...
3652 days ago
- ...QL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses like principal...
3425 days ago
- +98 more Bookmarks
Files
- Bioinformatician life is interconnected, they always dream for a powerful server, little more space on server as they are generating lots of data per run, dream to publish results in good impact journals, meetings reminders :) and research analysis off course!!!
3909 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3867 days ago
- +3 more Files
Pages
Keep Your Important SSH Session Running when You Disconnect from Server !!!
...tion, analysis, comparative study we do need to run exhaustive programs, which mi...ll allow you to keep multiple terminal sessions running and easily switch between...mal prompt.To disconnect (but leave the session running)Hit Ctrl + A and then Ctr...3703 days ago
Monitor running jobs on Linux server
...ou sometime need to check the running programs and want to monitor the running programs as well. The "to...;top’ is very simple to run: type%% topYou’ll get a...e load on the machine. If you run something for a long time, yo...inally! What’s actually running! The two most important n...3620 days ago
- +7 more Pages
Top-level pages
List of In-silico Binding Site Prediction Tools
...equence or a protein structure. If a sequence is submitted then Phyre is run to predict the structure. The...cavities in a given protein. DEPTH: http://mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the...3743 days ago
Linux for bioinformatician !!!
...an ease. The field of bioinformatics relies heavily on Linux-based computers and software. Although most bioinformatics programs can be compiled to run. If you don’t know what...3705 days ago
- +25 more Top-level pages
Wire posts
News
- ...ns of nanowells at fixed locations, combined with a new clustering chemistry deliver a significant increase in data density (6 billion clusters per run). Using state-of-the art opti...
3762 days ago
- ...stallr package http://cran.r-project.org/web/packages/installr/ . Simply run the following code:# installi...-your-r-upgrading-strategy-and-the-r-code-to-do-it-on-windows/ , you can run the following in the new vers...
3708 days ago
- +11 more News
Opportunity posts
- ...ar circumstances may be renewed or made permanent subject to availability of funding. More @ https://hrwebapp.qub.ac.uk/tlive_webrecruitment/wrd/run/ETREC107GF.open?VACANCY_ID=56...
3853 days ago
- ...n Novotel Sydney Brighton Beach, Sydney, New South Wales, Australia. This year, the InCoB will be held earlier from 31st July to 2nd August 2014 to run back-to-back with the Interna...
3831 days ago
- +5 more Opportunity posts
ResearchLabs posts
- ...s and combinatorics, algorithmic tools and molecular physics tools to study basic principles of cellular functioning starting from genomic data. We run several projects in parallel,...
3266 days ago
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at...3896 days ago
Bio-Scripts
- ...sentials: # Debian/Ubuntu system admins should run: sudo apt-get install -y bui...libxml2-dev # RHEL/CentOS system admins should run: sudo yum groupinstall -y 'D...::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::Devel List::Uti...
2144 days ago
Install BLAST in Ubuntu/Linux and Window !
.... #If that FTP links does not work, try HTTP instead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the de...1146 days ago
- +48 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...rmatician must have a strong biological background in his/her research area which will allow them to understand if anything went wrong during their run by only looking at the result...2361 days ago
Tags
- SLURM is a queue management system and stands for Simple Linux Utility for Resource Management. SLURM was developed at the Lawrence Livermore National Lab and currently runs some of the largest compute clusters in the world. SLURM is similar in many ways to most other queue systems. You write a ...
Tags: Bioinformatics, SLURM, Job, Server, Run, Cluster, Basics
2914 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...Tags: Run, miniasm, assembler, nanopore, reads
2330 days ago
Comments
Comment on "Benchmarking Perl Module !"
...ogram should take the form of a subroutine that runs the code you want to benchma...my $result = MyModule::my_function(); } Run the benchmark: Call the timet...that exercises the functionality of the module, running the benchmark using the t...415 days ago
Comment on "Short-read assembly using Spades !"
...Ades: Quality control of raw reads: Before running the assembly, it is impor...rious tools such as Trimmomatic or FastQC. Running SPAdes: After quality con...ASTQ format. Evaluation of assembly: After running SPAdes, the next step is...415 days ago
- +15 more Comments
