Results for "Scoring"
Blogs
...geR - *R SVM (R) KernLab (R) NeuralNetworks (R) NNet (R) Model Delivery Evaluating Models: *OnePageR - *R Evaluation (R) Scoring (R) PMML (R) Exporting Model...3278 days ago
BBTools for bioinformatician !
...are always kept together). But when a read or pair has two identically-scoring mapping locations, on differe...though, that the primer sites identified are based on the normal BBMap scoring, which is not necessarily the...2284 days ago
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Bookmarks
- ..., like GEO data sets, Biomart, GO, KEGG, Atlas, ArrayExpress, and PIPAx database. As for the analytics, there is gene selection, quality control, scoring distances between experiments...
3513 days ago
YASS :: genomic similarity search tool
...seeds to improve sensitivity (transition mutations are purine to purine [A<->G] or pyrimidine to pyrimidine [C<->T]) using different scoring schemes with bit-score and E-...2939 days ago
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Top-level pages
List of In-silico Binding Site Prediction Tools
...d trajectories) is out now. fpocket includes two other programs (dpocket & tpocket) that allow you to extract pocket descriptors and test own scoring functions respectively. Furth...3758 days ago
Commercial and public next-gen-seq (NGS) software
...Tao Liu from Xiaole Shirley Liu's Lab. PeakSeq - PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls. a two-pass approach for scoring ChIP-Seq data relative to con...3533 days ago
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Wire posts
News
Conserved Domain Database (CDD) version 3.11 released
...ons of RPS-BLAST (BLAST release 2.2.28 and up) using composition-based scoring. This abolishes the need to m...results will provide, for each region on the query sequence, the best0-scoring domain model (if any) from ea...3741 days ago
- ...ion is scheduled on June 12,2016 and Part- II (Paper - II and Paper- III) on June 26, 2016. The Paper- I will be of objective type and candidates scoring a minimum of 40% marks in Pap...
2930 days ago
Opportunity posts
China University of Macau PhD Position 2015 in Bioinformatics, Computer Science
...ing as part of a team in developing novel metaheuristic algorithms and scoring functions for large-scale, hi...ing as part of a team in developing novel metaheuristic algorithms and scoring functions for large-scale, hi...3436 days ago
Bioinformatics National Certification (BINC) Examination 2016
...ion is scheduled on June 12,2016 and Part- II (Paper - II and Paper- III) on June 26, 2016. The Paper- I will be of objective type and candidates scoring a minimum of 40% marks in Pap...2930 days ago
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
...usage: $0 \n" unless @ARGV == 4; # get sequences, matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring scheme (instead of using fixe...2919 days ago
- ...PathSeqPipelineSpark Combined tool that performs all steps: read filtering, microbe reference alignment, and abundance scoring PathSeqScoreSpark...
2089 days ago
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Tags
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.Tags: G-NEST, Gene, NEighborhood, Scoring, Tool
1331 days ago
Comments
Comment on "AutoDock Vina: an open-source program for doing molecular docking."
QVina-W, a new docking tool particularly useful for wide search space, especially for blind docking. QVina-W utilizes the powerful scoring function of AutoDock Vina, the accelerated search of QVina 2, and adds thorough search for wide search space. https://qvina.github.io/1436 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...gger a bwt-based query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19] -f --fastest Use GEM-mapper's fastest mode(--fast-mapping=0). [false] Scoring options: -m --match-sc [INT]...2136 days ago
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