Results for "Script"
Users
About me: ...s evolution. I (We) develop certain computational pipeline, and algorithms to harness the huge amount of biological data (genomes, epigenomes, transcriptomes, proteomes, etc.) to answ...8 days ago
- Skills: Javascript; Database: MySQL; Microarray data Analysis; Comparative Genomics; NGS; Proteomics; Molecular Phylogenetics; Teaching
2923 days ago
- +7 more Users
Blogs
- ...so they might be different on your machine. Then I went back into the CPAN shell and ran$ install GD::GraphThere were a few dependencies which the script fetched and installed for me...
3937 days ago
List of gene ontology software and tools
...ne products with terms from the Gene Ontology. http://goat.man.ac.uk/ Script https://github.com/tanghaibao...urated database of human protein-protein, protein-DNA interactions, transcription factors, signaling and met...3707 days ago
- +12 more Blogs
Bookmarks
- ...arrow down your search result. This webpage can be an useful resource for a beginners bioinformatician as it contain several bioinformatics basics script that are commonly used by bio...
3914 days ago
Download mutliple fasta file from NCBI in one GO!!
...tract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){...3908 days ago
- +31 more Bookmarks
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3866 days ago
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3864 days ago
- +1 more Files
Pages
Clump Finding Problem Solved with Perl
The question at http://rosalind.info/problems/1d/ Script are moved to http://bioinformaticsonline.com/snippets/view/34633/clump-finding-problem-solved-with-perl2332 days ago
Genome Assembly Tools and Software - PART2 !!
...emblyStage1: Perfectly aligns TranscriptSimulator reads to their nucle...ion Approach to RNA-Seq Based Transcriptome AssemblyIsoLasso is a...Oases 0.2.08 – De novo Transcriptome Assembler for very short r...Assembly of Roche-454/Sanger Transcriptome SequencesiAssembler i...2683 days ago
- +4 more Pages
Top-level pages
- ...otein sequences. The next step after reading genetic code is writing a script to analyse and explore the hi...programming languages with their packages/libraries, and assist in your scripting work. Navigate the sub-se...
3945 days ago
Most Commonly used Awk by Bioinformatician
...f 'stuff | grep | sed | cut...' with a single call to awk. For a simple script, most of the timelag is in lo...or some quick job in the terminal, or build an awk section into a shell script. You can find a lot of online...3910 days ago
- +12 more Top-level pages
Wire posts
News
BLAST nr version 5 database, (nr_v5)
...ftp.ncbi.nlm.nih.gov/blast/db/v5/ For BLAST+ there is a cleanup script to help you manage the transition to this smaller database. The script removes unused database volum...1715 days ago
NCBIBLAST+ 2.14.1 now available
...changes they made. They added the cleanup-blastdb-volumes.py script to remove unused BLAST databa...hen downloading data from the NCBI with the update_blastdb.pl script. And fixed a few bugs relate...247 days ago
Opportunity posts
Structural polymorphism analysis from NGS data
...://transplantdb.eu, AMAIZING http://www.amaizing.fr/). The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pip...3946 days ago
Senior Bioinformatics Programmer and SRF at BIOTECH PARK Lucknow
...es, maintenance of website, Drug designing and QSAR study etc. c) Desirable Knowledge of Bioinformatics tools, Windows, Linux, C++, JAVA / JAVA Script, Visual Basic, CGI, DBMS/RDBM...3906 days ago
- +3 more Opportunity posts
Fun
The Best Bioinformatics / Computational Biology Quotes
...d; call it version 1.0 The glass is neither half-full nor half-empty: it's actually have several genomes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my da...3718 days ago
- ...<=100; $count++) { print "It is in my gene!!!";}I guess, he is gonna to be a real biogeek. Nice try though. Smart kid. 2. In some perl script I found this . . . . ....
3699 days ago
Video
- Illustration and Animation: Rachel Robinson Script: Tiffany Trent Voice-over: Kris Monger Sound: Glisten Carefully by Guennadi Malyshevski
3901 days ago
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import...1134 days ago
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org #Parse command...1099 days ago
- +124 more Bio-Scripts
Groups
...374/Brown.pdf http://journals.sfu.ca/rncsb/index.php/csbj/article/view/csbj.201301004/205 Alignment tools for this include: mz-Mine XCMS (R code script), and Metalign Metabolomics...3703 days ago
Tags
- Perl has a ton of command line switches (see perldoc perlrun), but I'm just going to cover the ones you'll commonly need to debug code. The most important switch is -e, for execute (or maybe "engage" :) ). The -e switch takes a quoted string of Perl code and executes it. For example:$ perl -e 'pr...
Tags: Bioinformatics, Computational Biology, Education, Study, Script, Perl, Oneliner, Basic
3267 days ago
Reverse Complement Problem Solved with Perl
Question at http://rosalind.info/problems/1b/ #Find the reverse complement of a DNA string.#Given: A DNA string Pattern.#Return: Pattern, the reverse complement of Pattern.use strict;use warnings;my $string="AAAACCCGGT";my $finalString="";my %hash = ( "C" => "G", ...Tags: Bioinformatics, Computational Biology, Education, Solution, Puzzle, Study, Script, Perl, Reserve, Complementary
3250 days ago
- +3 more Tags
Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering the following com...420 days ago
Comment on "Perl Module Installation"
...install cpanminus Install BioPerl by entering the following command: cpanm BioPerl Verify the installation by running a BioPerl script or entering the following com...420 days ago
- +16 more Comments
