1515 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source a...of #the system. We are going to update the environment variables to force the shell to...2097 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https...hange /data/sata_data/workshop/wsu29/anaconda3/shell/condabin/Conda.psm1 no change /data/sata_data/workshop/wsu29/anaconda3/shell/con...1554 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-lat...ange /data/sata_data/workshop/wsu29/miniconda3/shell/condabin/Conda.psm1 no change /data/sata_data/workshop/wsu29/miniconda3/shell/con...1554 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittmp/.../etc/fish/conf.d/conda.fish no change /home/jit/anaconda3/shell/condabin/Conda.psm1 no change /home/jit/anaconda3/shell/con...1510 days ago
1506 days ago
1441 days ago
1162 days ago
Rules to run fastp / Snakemake !
rule fastp: input: fwd=INPUT + "/{sample}-read_1.fq", rev=INPUT + "/{sample}-read_2.fq"...5 log: RESULTS + "/logs/fastp/{sample}.preprocess.log" shell:...900 days ago