Results for "Simulation modeling"
Bio-Scripts
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=m...1729 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups....ptions .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simulation. This simulation use the r...o = 0.5 [Sun Jan 10 16:05:57 2021] Simulati...1205 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genom...ptions .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simulation. This simulation use the r...t = 0.5 [Sun Jan 10 16:14:00 2021] Simulati...1205 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.gen...fied options .. Running simuG for CNV simulation >> Ignore all options for inversion/translocation simulation. This simulation use the r...= 10000 [Sun Jan 10 16:24:20 2021] Simulati...1205 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome....options .. Running simuG for inversion simulation >> Ignore all options for translocation simulation. This simulation use the r...= 100000 [Sun Jan 10 16:30:40 2021] Simulati...1205 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome.fa -t...d options .. Running simuG for translocation simulation >> This simulation use the random seed: 19251958...ce map for genomic variants introduced during simulati...1205 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troublesom...on construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of Ks distributions. pre...1197 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved reads=100k length=250 mininsert=400...984 days ago
- $ sudo apt install art-nextgen-simulation-tools [sudo] password for neelam:...Suggested packages: art-nextgen-simulation-tools-profiles gsl-ref-psdoc...s will be installed: art-nextgen-simulation-tools libgsl23 libgslcblas0...tu focal/universe amd64 art-nextgen-simulati...
658 days ago
