Results for "Single Nucleotide Polymorphisms"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collectio...nce blocks, regardless of whether it encompasses multiple genes, an area containing single genes,...2607 days ago
The 5 reasons to mistakes at bioinformatics work !!!
When you're just starting out with biological programming, it's easy to run into complex pr...t out at end check out and clear your doubt even for a single err...they are no more than 95 percent complete. Sometime a single proble...2103 days ago
- +27 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1143 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click...3907 days ago
- +166 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical memb...lipid-exposed faces of the TM domains. Results: In a cross validated test on single sequen...3942 days ago
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3863 days ago
- +2 more Files
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing the GridION...ience, security/defence and more. The platform technology uses nanopores to analyse single molecu...3810 days ago
- The key to finding a solution is to notice that most genomicsequences differ by very litt...reasing rapidly, but the actual amount of new data is very small. In other words, a single DNA se...
3917 days ago
Pages
- Ruby was created by Yukihiro Matsumoto, who wished to create a new language that balanced func...isp, Dylan, Pike, and CLU. The standard 1.8.7 implementation is written in C, as a single-pass i...
3945 days ago
Find certain files/documents in Linux OS
As bioinformatician I know the fact that we usually handle the large dataset and lost in the huge numbers of...ind / -type d -perm 777 -print -exec chmod 755 {} \;17. Find and remove single FileTo find a single file c...3679 days ago
- +5 more Pages
Top-level pages
- ...rious types of data including nucleotide and amino acid sequences,...tein interactions; analysing single nucleotide polymorphisms to hunt for genetic source...etail on the structure level. Single Nucleotide Polymorphisms can be mapped on 3D structure...
3945 days ago
- Genomics is the study of the genomes of organisms. The field includes intens...stigation of the roles and functions of single genes is a primary focus of m...al and biological research. Research of single gen...dling simple submissions that contain a single short...
3939 days ago
- +32 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
...CSIRO, and the USDA as part of the International Sheep Genomics Consortium. It features over 54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More than 18,000 of t...3894 days ago
- In current era, we are handling huge amount of genomics data, and analysing it to make some bi...uch as keeping all information from the raw BLAST output, allowing direct access to single result...
3887 days ago
- +21 more News
Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...aptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants...3946 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is available for four years to work on...mapping positions of the ribosomes on the whole transcriptome level with a nucleotide pr...3913 days ago
- +18 more Opportunity posts
ResearchLabs posts
The Laboratoire de genomique fonctionelle
One persistent challenge of post genome biology remains the determination of the functions...genes. In mammals this task is formidable given that a single gen...alternative pre-mRNA splicing. Protein isoforms from a single gene c...3945 days ago
- Interested in various topics at the intersection of ecology and evolution. In my research I us...because populations of thousands can be kept in small containers in the lab, while single indivi...
1144 days ago
- +7 more ResearchLabs posts
Video
- View more AMAZING medical animations at http://www.nucleuslibrary.com To download FREE med...n as conception. Fertilization is the epic story of a single spe...e molecular level, genetic material from the egg and a single sperm...
3814 days ago
Flu Attack! How A Virus Invades Your Body
When you get the flu, viruses turn your cells into tiny factories that help spread the disease...rt Krulwich and medical animator David Bolinsky explain how a flu virus can trick a single cell i...3906 days ago
- +3 more Video
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has mor...= x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',i...1133 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -q...1099 days ago
- +28 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Bi...of the tools. Considering this, if the field carries on developing like this, every single resear...2359 days ago
Groups
Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner....3917 days ago
Metabolomics is the comprehensive and quantitative analysis of multiple metabolites in biologi...ples. Metabolome is the complete set of small-molecule metabolites found within a single biolog...3703 days ago
- +1 more Groups
Tags
What are the best known workflow or tutorial for SNP calling?
Tags: SNP, Workflows, Tutorial, Single Nucleotide Polymorphisms, SNPs, Variants
3580 days ago
Comments
Comment on "List of popular bioinformatics software/tools"
A program for annotating and predicting the effects of single nucleotide polymorphisms (SNP) http://snpeff.sourceforge.net/ http://snpeff.sourceforge.net/SnpEff_paper.pdf3568 days ago
