Comment on "Short-read assembly using Spades !"
...he process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a popular software tool for short-read assembly....409 days ago
Comment on "Short-read assembly using Spades !"
...verview of how to use SPAdes for short-read assembly: Install SPAdes: SPAdes can be downloaded from the official website (http://cab.spbu.ru/software/spades/). It is available for...414 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...f the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Iden...417 days ago
Comment on "Download desire version of Blast software !"
Latest blast software and old versions https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/936 days ago
Comment on "Coronavirus Resources !"
Illumina toolkit for SARS-CoV2 https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about955 days ago
1095 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...variant and indel caller for mapped sequencing data. [ paper-2015 ]gridss – GRIDSS: the Genomic Rearrangement IDentification Software Suite. [ paper-2017 ...1136 days ago
Comment on "Sibelia: A comparative genomics tool"
...synteny blocks with a colorful circular diagram by using the "Circos" software [3]. Files for generating suc...te "Circos" diagram do following: 1. Download and install "Circos" software 2. Run "Sibelia" 3. Run "Ci...1279 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping t...1331 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics tools are published by this journal f1000research https://f1000research.com/for-authors/article-guidelines/software-tool-articles1434 days ago