Results for "Transcript Assembly"
Blogs
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on computational analysis of huge amou...analysis that you are doing. This is particularly true in the case of genome assembly and annotation. At the end,...3734 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two daugh...on process. This is followed by nuclear envelope dissolution, mitotic spindle assembly, migration of the sister chro...3579 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3937 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutor...cument/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oejdI Microbial de novo Assembly for Illumina Data Introductor...3514 days ago
- +260 more Bookmarks
Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offensive smell or odour whic...ated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file...3816 days ago
- Saved Cornell University assembly workshop PPT. Reference: http://cbsu.tc.cornell.edu/lab/doc/assembly_workshop_20150420_lecture1.pdf
2824 days ago
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Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3971 days ago
Want to Know which genome assembler rule the world ?
Assemblathon 2: evaluating de novo methods of genome assembly http://www.gigasciencejournal.com/content/2/1/10/abstract http://blogs.nature.com/news/2013/07/genome-assembly-contest-prompts-soul-searchin...3946 days ago
Pages
Bio++ : C Language libraries for your biological need
...ures that would otherwise require the use of Assembly Language. As Dennis Ritchie wr...tation language efficient enough to displace assembly language, yet sufficiently ab..., etc.In silico molecular biology: (reverse) transcription, translation, replicatio...3974 days ago
Genome Assembly Tools and Software - PART2 !!
...emblers, best suited for your assembly. For the sake of computational...e therefore list many genomle assembly tools here. We mainly reported...p;(Mimicking Intelligent Read Assembly)is a whole genome shotgun and E...s and it rteturns an improved assembly (more contiguous and more corre...2712 days ago
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Top-level pages
- ...e contigs to obtain one continuous sequence; find the tranlation and transcription initiation sites, find pro...D. Fleischmann et al. (1995) Whole–genome random sequencing and assembly of haemophilus–influenz...
3974 days ago
- Genomics is the study of the genomes of organisms. The field includes intensive efforts...Package consists of a series of tools for DNA sequence preparation (pregap4), assembly (gap4), editing (gap4) and DN...
3969 days ago
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Wire posts
News
- A team from Cold Spring Harbor Laboratory has r...pel works by performing de novo assembly of regions of interest, so th...nnovation is to repeatedly check its assembly before comparing to the refer...minated. This ensures that the final assembly of the exon is highly accurat...
3573 days ago
- New updates in e!77 !! Updated human gene set (GENCODE 21) Updated rat gene set including manual an...notation from HAVANA New species: Vervet-African green monkey Imported Transcri...
3526 days ago
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Opportunity posts
Bioinformatics PhD studentship available in New Zealand
Bioinformatics PhD studentship available in New Zealand The importance of transcriptional control has been explored in a burge...nt shifts towards large-scale analyses of transcriptional regulation on a sequence...Curriculum Vitae, a copy of your academic transcri...3974 days ago
- Institution/Company: University of Calgary Location: Calgary, AB Job Description: Novel diagnostic platform...cover letter explaining your interest in the lab - Resume - Scanned copy of transcri...
3808 days ago
- +17 more Opportunity posts
ResearchLabs posts
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biological systems using computational biology and bioinformatics technique...signaling systems using comprehensive genomics data like genome sequence and transcri...3974 days ago
- Efflux pumps (RND family) Functioning of efflux systems in Gram-negative bacteria De...lux systems Structural and dynamical features of the efflux systems TatA Assembly of the TatA system Study of...
3895 days ago
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Video
How DNA is Packaged (Advanced)
...DNA. Originally created for DNA Interactive ( http://www.dnai.org ). TRANSCRIPT: In this animation we'll see...ked up to fit into the nucleus of every cell. The process starts with assembly of a nucleosome, which is for...3903 days ago
- Transcription is the process by which the information in DNA is copied into...nteractive ( http://www.dnai.org ). TRANSCRIPT: The Central Dogma of Molecul...s protein" Here the process begins. Transcription factors assemble at a spec...these factors is referred to as the transcri...
3411 days ago
Bio-Scripts
- #!/usr/bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #transcribe DNA to RNA - T changes to U my $RNA = $DNA; $RNA =~ s/T/U/g; print "RNA sequence...
2943 days ago
Download the genome from NCBI using bash script/command
...d genome # Look for genome assembly summary and extract the URL....nih.gov/genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"}....gov/genomes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"}...h.gov/genomes/refseq/protozoa/assembly_summary.txt' | awk '{FS="\t"}...2559 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a program...le with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and...3557 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering an...) is, applying a bioinformatics-supported genome, transcriptome, proteome, and metabolome...t based on this profile. Alterations in the gene, transcri...2389 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, mor...ampling for motif finding Biclustering algorithms Genome Assembly Developement of new algorithms to speed up the assembly procedure Comparative genomi...3970 days ago
Tags
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many transcript assemblies is much better than too few. It allows one then to apply biological criteria to pick out the best ones. Don't be misled by the "right number" of transcripts th...Tags: EvidentialGene, tr2aacds, mRNA, Transcript Assembly, Software
2069 days ago
Comments
Comment on "Running Trinity on RNA-seq !"
Once your assembly is complete, there are several analyses you will likely...r organism based on your assembled transcripts and the input RNA-Seq data....es might include: Quantifying transcript and gene abundance. This is a...nbsp;and functionally annotate the transcripts using&...2150 days ago
