Results for "UG"
Bio-Scripts
Use pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTCCT GACCTTTTCT TAAGATCTTT TCTTTAGCCG TTTCTTCTTT GA...1216 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa...muSNP [Sun Jan 10 16:05:57 2021] Starting simuG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Running simuG for SNP/INDEL simulation >>...1212 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome....INDEL [Sun Jan 10 16:14:00 2021] Starting simuG .. [Sun Jan 10 16:14:00 2021] Check specified options .. Running simuG for SNP/INDEL simulation >>...1212 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL.simseq.genom...muCNV [Sun Jan 10 16:24:20 2021] Starting simuG .. [Sun Jan 10 16:24:20 2021] Check specified options .. Running simuG for CNV simulation >> Igno...1212 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome....muINV [Sun Jan 10 16:30:40 2021] Starting simuG .. [Sun Jan 10 16:30:40 2021] Check specified options .. Running simuG for inversion simulation >>...1212 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome....TRANS [Sun Jan 10 17:12:58 2021] Starting simuG .. [Sun Jan 10 17:12:58 2021] Check specified options .. Running simuG for translocation simulation...1212 days ago
Set up WGD environment using conda !
...; This is free software, and you are welcome to redistribute it under certain conditions; Contact: arzwa@psb.vib-ugent.be Options: -v, --verbosity [info|debug] Verbosity level, default =...1205 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
#Need to download i-adhore-3.0.01.tar.gz from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.translate.goog/webtools/i-adhore/licensing/ #Follow these steps...1205 days ago
- ...-cran-mass r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-nnet r-cran-rpart r-cran-spatial r-cran-survival r-doc-html r-recommended scour zlib1g-dev Suggested packages: autoconf-a...
1056 days ago
Tadpole is 250x faster than SPADes assembler !
...repasses=1 Use this many prefiltering passes; higher be more thorough if the...the read using the reassemble algorithm. errorpath=1 (ep) For debugging purposes. Junk-removal...977 days ago
