Results for "VT"
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Next Generation Sequencing (NGS) Tutorials
...cument/pub?id=1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM Variant Detection Introductory tutorial https://docs.google.com/document/pub?id=1ZRzrjjOCvtAu3m-IKL-rbJ1f4On60dDL_IEwG7oe...3502 days ago
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq different...
3668 days ago
- The India Innovation Growth Programme is a joint initiative of the Department of Science and Technology, Govt. of India; Lockheed Martin Corporation; Indo-US Science and Technology...
3416 days ago
Painless package development for R
Devtools makes package development a breeze:...he cycle of package development. With devtools, developing a package bec...get started be sure to check out: devtools Google Group – ...ndash; https://github.com/hadley/devtools2939 days ago
AliTV—interactive visualization of whole genome comparisons
...sualized data as well as the export of publication-ready high-quality figures. AliTV is freely available at https://github.com/AliTVTeam/AliTV https://alitvteam.github.io/AliTV/2322 days ago
vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vt1574 days ago
Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broa...1549 days ago
gggenes: a ggplot2 extension for drawing gene arrow maps.
Install the stable version of gggenes from CRAN: install.packages("gggenes") If you want the development version, install it from GitHub: devtools::install_github("wilkox/gggenes") More at https://github.com/wilkox/gggenes1448 days ago
- ...alling the PheWAS Package The PheWAS package can be installed using the devtools package. The following code when executed in R will get you started: install.packages("devtools") #It may be necessary t...
1389 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...864 days ago
