Results for "Validation"
Blogs
Five points for bioinformatics software/tools
...m your computational and analysis work, most of the reviewer also prefers the open source based results so that they can validate the results if validation required. 2. Code headache...3705 days ago
Important Journals, Blogs and Forums for Bioinformaticians
...on computational biology by Lior Pachter (fair warning: dialogue here can get a bit heated!). Blue Collar Bioinformatics: articles related tool validation and the open source bioinform...2641 days ago
- +2 more Blogs
Bookmarks
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., ma...
2780 days ago
LIBSVM -- A Library for Support Vector Machines
...fferent SVM formulations Efficient multi-class classification Cross validation for model selection Probabil...olver. Automatic model selection which can generate contour of cross validation accuracy. https://www.cs...2466 days ago
- +11 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...uality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be genotyped in sample population for validation and then used for constructin...3787 days ago
Top-level pages
- ...on necessary for the structural genomics projects make an independent validation of the structures (by comparison to expected properties) particularly important. Structure validation helps to correct obvious erro...
3945 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ity control tool for high-throughput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Page Reference-free validation of short read data. Schrö...3777 days ago
- +2 more Top-level pages
Wire posts
News
- ...re eliminated. This ensures that the final assembly of the exon is highly accurate while minimizing compute time. The Cold Spring Harbor team's validation of Scalpel, published over th...
3544 days ago
Cleaner BLAST Databases for More Accurate Results
Do you use BLAST to identify a sequence or the evolutionary scope of a gene? That can be challenging if contaminated and misclassified sequences are in the BLAS...10 days ago
Opportunity posts
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
...hD degree in statistics, biostatistics or bioinformatics, extensive experience in analyzing high-dimensional data (microarray, SNP, CNVs) and of validation approaches. In addition, expe...3918 days ago
SRF/JRF/RA @ UNIVERSITY OF HYDERABAD
...rch Fellowship in CSIR- sponsored research project. JRF/SRF/RA (one vacancy) CSIR sponsored “In silico design, identification and in vitro validation of lead molecule inhibitors t...3854 days ago
- +8 more Opportunity posts
ResearchLabs posts
- ...microarray and next-gen sequencing data and understanding the role of miRNAs or other regulatory RNAs in various diseases, especially cancer and validation by reporter assays (renilla/l...
3872 days ago
- ...high throughput genomic data: analysis of cancer genome sequencing projects; integration of genomic information across technologies; cross-study validation of genomics results. Stati...
3878 days ago
- +2 more ResearchLabs posts
Tags
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows by the day, quality assessment of the resulting assembled sequences remains complicated and mostly limited to technical measures like N50. BUSCO provides measures for q...
Tags: Bioinformatics, Validation, Assembly, BUSCO, Orthologs, NGS
2915 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been publishe...Tags: Bioinformatics, Analysis, NGS, Validation, Assembly, Genome
2795 days ago
- +5 more Tags
Comments
- Thanks for reporting the updated tool for assembly validation, you can also try following methods/pipelines CEGMA (formally discontinued but still useful) BUSCO (we have i...
2929 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
... Yes Copula Models Yes Yes Experimental Cross-Validation Yes Ye...3550 days ago
