1133 days ago
Software and Tools to detect structure variation with long reads !!
...V calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-end reads from WGS samples More at https...2601 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
...ads LQSDALIGNER, Celera OLC Nanocorrect, Nanopolish correctorhttps://github.com/jts/nanopolish PBcRHGAP or BLASR, Celera OLC PBcR correctorhttp://wgs-assembler.sourceforge.net/wik...2314 days ago
3646 days ago
3227 days ago
Genome Assembly Tools and Software - PART2 !!
...erred haplotypes. RePS 2.0 – WGS Sequence AssemblerRePS (...t-masked Phrap with scaffolding), a WGS sequence assembler, that expl...ting assemblies. Fermi 1.1 – WGS de novo Assembler based on th...t Substitution Sequencing Errors in WGS Data Sets Quake is a pa...2679 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...customizable aligners (Bowtie, Bowtie 2, BWA, GSNAP, Isaac 2, SHRiMP 2, STAR, TMAP, TopHat and TopHat 2) Applications for RNA-Seq, Small RNA-Seq, WGS/WES, Pathway enrichment, Fusi...2902 days ago
Genome Assembly Tools and Software - PART1 !!
...ssembler 8.3 – Whole Genome Shotgun Assembler Celera Assembler (wgs-assembler) is scientific soft...Phusion 2.1c – Assembly Genome Sequences from Whole Genome Shotgun(WGS) Reads Phusion is a softwa...2679 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...stract Whole exome DNA sequencing (WES) or whole genome DNA sequencing (WGS) allows detection of mutation...erse transcriptional aberrations that can be missed in a stand-alone WES/WGS analysis. An integration of D...3365 days ago
GenBank release 257.0 is now available!
...llion records. The current release has: 246,119,175 traditional records containing 2,112,058,517,945 base pairs of sequence data 2,631,493,489 WGS records containing 22,294,446...250 days ago
Senior Research Fellow at NIT, Rourkela
...rable Qualifications/ Experiences: Experience of Programming in PERL,R, Python, Unix and Visual Studio + Knowledge in NGS data analysis work flows ,WGS and statistical packages such...3561 days ago
Sr.Bioinformatics Analyst (NGS) at Ocimum Biosolution
...t have minimum 2+ years of hands on experience in NSG data analysis such as RNA-Seq,Exome-Seq ,Chip-Seq and downstream analysis. 7. Knowledge in WGS ,WES, Targeted re-sequencing,...3453 days ago
2069 days ago
Pack a perl program with their dependencies on Ubuntu !
...tes is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly use...1505 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler version 8.3rc2, which was released on May 24, 2015.This distribution package provides a stable, tested, documented version of the software. The distribution is usable on most Unix-like platforms, and some platforms have pre-compiled binary distri...Tags: Bioinformatics, wgs-assembler, WGS, PBcR, Pacbio, Correct, Packages, Tools, Simulation, Fastq
2576 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mosdepth can output: per-base depth about 2x as fast samtools depth--about 25 minutes of CPU time for a 30X genome.mean per-window depth given a window size--as would be used for CNV calling.the mean per-region given a BED file of regions.a distribution of proportion of bases covered at or above...Tags: mosdepth, fast, BAM, CRAM, depth, calculation, WGS, exome, target, sequencing
1625 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...-to-map regions like pseudogenes and segmental duplications). GIAB is also exploring expanding to additional samples consented for release of WGS and redistribution of commerc...1553 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1944 days ago