Results for "analyze"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...a generic sequence comparison tool for visualizing genome alignments both within and between species. It is intended to help scientists study and analyze synteny, homologous genes and...2620 days ago
List of gene ontology software and tools
...ecific studies by leveraging GO and providing a rich graphical user interface. It is a simple to use tool, specialized for biologists who wish to analyze spectral counting data from s...3720 days ago
- +6 more Blogs
Bookmarks
Bioinformatics software for biologists in the genomics era
...nsion of the fundamental paradigms under which biologist-friendly software tools are designed and developed to fulfill the needs of biologists to analyze large datasets by using sophi...3797 days ago
- ...analysis and initial quality assessment of the library. ChIP Seq Protocol ChIP-Seq In this protocol we discuss ChIP-Seq: a method to analyze the interaction between prote...
3663 days ago
- +38 more Bookmarks
Top-level pages
- ...ols and approaches for expanding the use of biological, medical, behavioral or health data, including those to acquire, store, organize, archive, analyze, or visualize such data." - N...
3957 days ago
List of bioinformatics open source projects/software.
...connections with other bioinformatics tools GENtle http://directory.fsf.org/wiki/GENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files...3767 days ago
- +11 more Top-level pages
Wire posts
News
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...areas of Human Health, Agriculture, Livestock and Environment. The pace of sequencing is leading to a data overload and therefore the ability to analyze is much beyond the existing c...3855 days ago
- ...aid Eric Lander, founding director of the Broad Institute and a professor of biology at MIT. “The HiSeq X Ten should give us the ability to analyze complete genomic information...
3772 days ago
- +2 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...versity, Agroecosystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (N...3959 days ago
EMBO Practical Course, Bioinformatics, large-scale data, at Shenzhen, China
...nto how biological knowledge can be generated from high-throughput sequencing (DNA-Seq, RNA-seq, ChIP-seq) experiments and will illustrate how to analyze such data. The course covers...3927 days ago
- +20 more Opportunity posts
ResearchLabs posts
PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
...omics. We also develop web-based applications that integrate data across domains to facilitate the forest geneticist or ecologist’s ability to analyze, share, and visualize their d...1364 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...f bioinformatics is, it utilizes computers to analyze life. One is example is the g...en read using next-generation sequencers, and analyzed by computers. In bioinformat...bacteria, and so on. The first method used to analyze a genome is comparing it with...3927 days ago
Computer Theory & Genetics: George Chao at TEDxUMNSalon
...elopmental genetics in Drosophila, computational techniques for analyzing protein interactions, and helping with the development of algorithms to analyze motion capture data of patien...3926 days ago
- +3 more Video
Bio-Scripts
- ...riant Discovery: Tools that analyze read coverage to detect copy...Calling Metrics files into a single file AnalyzeCovariates...Tools that analyze and manipulate FASTA format r...
2085 days ago
Tags
- Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip the delta file to speed up upload (usually 2-4X f...
Tags: assemblytics, delta, analyze, alignment, assembly, reference, genome, visualization
2162 days ago
GEnView: A phylogeny based comparative genomics software to analyze the genetic environment of genes
A phylogeny based comparative genomics software to analyze the genetic environment of genes. The user can select one or several taxa and provide one or several reference protein(s). Genomes and plasmids (based on user choice) will be downloaded from the NCBI Assembly/NR database and searched for ...Tags: GEnView, phylogeny, comparative, genomics, software, analyze, genetic, environment, genes
869 days ago
- +1 more Tags
Comments
Comment on "Benchmarking Perl Module !"
...call the timethese function to run the benchmark for 100 iterations: timethese(100, { 'MyModule' => \&benchmark_my_module, }); Analyze the results: The timethese fu...426 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such a useful list of synteny identification tools. If anyone interested to analyze synteny at the protein level, they can try this tool https://github.com/thiesgehrmann/proteny2994 days ago
- +1 more Comments
