Results for "annotate"
Blogs
List of motif discovery tools !
...of proteins with structural and topographical mapping of functionally annotated residues Identify and measu...rotein annotation resources through the Distributed Annotation System Annotate protein using this integrated...2006 days ago
Bookmarks
- ...le and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create g...
3023 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline...2943 days ago
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Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...r than alternative pipelines Annotates genomic data with allele and...AM files(tumor & normal), annotated as germline or somatic; also...hese somatic mutations can be annotated with predicted transcript an...me Trust Sanger; functionally annotates variants from whole-exome se...2922 days ago
Tools for bacterial whole genome annotation
...e loads of genomes or need to annotate a pangenome or metagenome. No...ation Pipeline is designed to annotate bacterial and archaeal genome...ES using SSEARCH computation. Annotate Sequence in KEGG Mapper and P...to produce submission-ready, annotated draft genomes. MyPro install...2345 days ago
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Wire posts
Bio-Scripts
- ...lyze read coverage to detect copy number variants. AnnotateIntervals (BETA Tool) Annotates intervals with GC content...s, e.g. with annotations not offered by the engine AnnotatePairOrientation...
2088 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...be good about the environmental control. In other words, one should always easily control input output directories, modify files or directories, annotate and modify employed scripts d...2375 days ago
Tags
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events.
Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community metagenomes remains an open problem. To address this, we ...Tags: WAAFLE, Workflow, Annotate, Assemblies, Find, LGT, Events
968 days ago
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the k-mer size. Tallymer can process large data sizes of several billion bases. We used it in a variety of applications to study the genomes of maize and other plant species. In particu...
Tags: Tallymer, method, compute, K-mer, frequencies, application, annotate, large, repetitive, plant, genomes
2284 days ago
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Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...in the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate the genes in each genome usin...437 days ago
Comment on "Running Trinity on RNA-seq !"
...ral DE analysis methods, including edgeR, DESeq2, Limma/Voom, and ROTS. Extract coding regions using TransDecoder and functionally annotate the transcripts using Tr...2136 days ago
