Results for "annotations"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...of study species by comparing to a well annotated reference sequence, thus enabling genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia (http://arxiv.org/a...2615 days ago
List of gene ontology software and tools
...l as extensive compilations of gene product annotations to these ontologies that prov...mental distinctions about GO structures, GO annotations, and what can and can not be...ow the generation of specific subsets of GO annotations, mapped to sequence identifie...3715 days ago
- +3 more Blogs
Bookmarks
Public Databases for Bioinformatics !
...papers, and other highly processed data here /mnt/data/ globally accessible data should store common data here e.g. genomes and indexes, annotations, ENCODE data if you dont w...1144 days ago
Integrative Genomics Viewer (IGV) tutorial
...w several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic varian...3590 days ago
- +45 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...nomic analysis, starting with next-generation sequencing reads and producing genomic scaffolds, open-reading frames and taxonomic or functional annotations. TIGER – DNA Sequence...2690 days ago
Top-level pages
- ...ce homology searches and links to other databases and analysis results. For example, SWISSPROT [1] contains verified protein sequences and more annotations describing the function of a...
3952 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...re Course materials for a short course entitled Introduction to R and Bioconductor, held in Seattle in Dec 2010 Genomic Regions Enrichment of Annotations Tool - A web service to test...3784 days ago
- +7 more Top-level pages
News
R package for visualising GO enrichment
...alyses such as differential expression or clustering, where for each gene list we display its behaviour in the experiment alongside with its GO annotations. Links @ http://raivokolde.g...3945 days ago
- An R package for analysing ontologies and protein domain annotations has been published in PLoS Computational Biology (http://dx.doi.org/10.1371/journal.pcbi.1003929). The package is di...
3471 days ago
- +3 more News
Bio-Scripts
- ...more HaplotypeCaller GVCF files into a single GVCF with appropriate annotations GenomicsDBImport...Tools that evaluate and refine variant calls, e.g. with annotations not offered by the engine...
2080 days ago
- ...quence file in FASTA format. The GFF file contains information about the #features (such as genes) in the genome, including their locations and annotations. #The outline of the steps...
99 days ago
Tags
- We propose AirLift, a methodology and tool for comprehensively moving mappings and annotations from one genome to another similar genome while maintaining the accuracy of a full mapper.
Tags: AirLift, methodology, tool, moving, mappings, annotations, genome, similar, genome
1600 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require a pre-generated “chain” file as input, Liftoff is a standalone tool that takes two genome assemblies ...Tags: Liftoff, accurate, tool, maps, annotations, GFF, GTF, assemblies
1409 days ago
- +1 more Tags
Comments
- Thanks for GeneSCF, it is really useful. I am dealing with new genome, with priliminary annotations. The annotated ids are not universally accepted. Once I tried to convert...
2640 days ago
Comment on "List of gene ontology software and tools"
...measure provides a competitive method with robust performance for quantification of semantic similarity between genes and proteins based on GO annotations. An R script for TopoICSim is...2837 days ago
- +3 more Comments
