Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de n...2652 days ago
List of genome announcement, notes and reporting journals
...permitted) describing novel data sets from high-throughput analysis of genotypes, phenotypes, gene expression, metabolomes, proteomes or genome assemblies.Standard metrics for data qual...2052 days ago
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Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of pla...1964 days ago
Genome Assembly Tools and Software - PART2 !!
...y of errors and comparisons between similar assemblies. SSPACE 3.0 – Scaffoldi...hich can be used as a metric for evaluating assemblies. Fermi 1.1 – WGS de nov...timate tool for resolving repeats in genome assemblies. Arachne 4.6233 – Whole...2730 days ago
Awesome perl frameworks, libraries and software - PART 4
tjstein/php5-fpm-munin-plugins - A set of Munin plugins for PHP5-FPM perusio/nginx-munin - A set of plugins for monitoring nginx with Munin openresty/lua-re...2538 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...al, PNAS 108(4): 1513-18, 2011 PubMedCentral Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. Florea et al., PLoS One...3823 days ago
Commercial and public next-gen-seq (NGS) software
...form that retains ambiguities, such as those arising from polymorphism, thereby providing information that has been absent from previous genome assemblies. Broad Institute. Edena - Eden...3563 days ago
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Post-doctoral Research Assistant in Genetics
Post-doctoral Research Assistant in Genetics Camden, North London £31.1K per annum inclusive of London Weighting This is a fixed term post for 36 months. We wish...3666 days ago
Postdoctoral Research Assistant at RVC
This is a fixed term post for 24 months. We wish to recruit a highly motivated, postdoctoral scientist to carry out a BBSRC funded project in the laboratory of Dr. Den...2171 days ago
Computational Structural Biology Lab IITKGP
The major areas of research: Molecular recognition: Protein-protein, Protein-Nucleic acid and Protein-ligand interactions. Studies on multi-component protein assembli...3274 days ago
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Tags: LTR_retriever, accurately, identifies, annotates, LTR, retrotransposons, LAI, evaluates, continuity, genome, assemblies.
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Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping to...1381 days ago