Results for "columns"
Blogs
BBTools for bioinformatician !
...can find the total percent mapped by adding the read 1 percent (where it says "mapped: N%") and read 2 percent, then dividing by 2. The different columns tell you the count/percent of...2278 days ago
Bookmarks
- ...e or more tab or space, which will be collapsed). No two rows or columns may have the same name. Colu...tion! Maximum row + column total is 150 — if exceeded, rows and columns are limited to 75. If you ar...
2810 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...r by jellyfish-histo or kat-histo. spectra-mx: Creates a K-mer spectra plot for a set of K-mer histograms that are derived from selected rows or columns in a matrix produced by the "...1989 days ago
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Pages
Check the Size of a directory & Free disk space.
...rdquo; command is really useful, and I guess you are going to use it over time. Typing the above command, outputs a table consisting of 6 columns. All the columns are very easy to understand....3710 days ago
Linux Sort Commands for Bioinformatics
...ort a huge file (GNU sort ONLY):sort -S 1500M -t $HOME/tmp input.txt > sorted.txt sort starting from the third column, skipping the first two columns:sort +2 input.txt sort the s...3634 days ago
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Top-level pages
Next generation sequencing in R or bioconductor environment
...egative binomial distribution. It expects as input a data frame with the raw read counts per region/gene of interest (rows) for each test sample (columns). Such a count table ca...3632 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...AR input format Output: VCF (if input VCF), output file with multiple columns, tab-delimited output file...mbines information from PolyPhen-2 and SIFT Input: tab-delimited with columns obtained from PolyPhen-2 and...2916 days ago
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News
- ...airs() gains new arguments to select sets of variables to be plotted against each other. file.info(, extra_cols = FALSE) allows a minimal set of columns to be computed on Unix-alikes...
3313 days ago
NCBI BLAST have added new columns to the Descriptions
NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are Scientific Name, Common N...ault display. You can click 'Select columns' or 'Manage columns' to add o...you download your results, whatever columns you have displayed will be sa...1259 days ago
Bio-Scripts
Blast result parser with Perl and Bioperl
...(-format => 'blast', -file => $infile); open (OUT,">$outfile") or die "Cannot open $outfile: $!"; # print the header info for tab-deliminated columns print OUT "query_name\tquery...2922 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-...2913 days ago
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NCBI BLAST have added new columns to the Descriptions
NCBI BLAST have added new columns to the Descriptions Table for web BLAST output. The new columns are Scientific Name, Common Name, Taxid, and Accession Length. Common Name and Accession Length are now part of the default display. You can click 'Select columns' or 'Manage columns' to add or...Tags: NCBI, BLAST, add, columns, Descriptions, Table, web, BLAST, output
1259 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...rmat. Each row of a table depicts one instance of this synteny block. Columns of the table designate follow...ates" section). Second part of the file is a table with the following columns: 1. Degree -- multiplicity...1293 days ago
