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How to install Perl modules manually, using CPAN command, and other quick ways
...sitivity, make and make test.# perl Makefile.PLChecking if your kit is complete...Looks goodWriting Makefile...l-Test-Harness.i386 0:2.64-31.fc9 perl-devel.i386 4:5.10.0-31.fc9Complete!Configure cpan the first time...3943 days ago
Tools to detect synteny blocks regions among multiple genomes
...an application to visualize and interrogate comparisons among multiple complete genome sequences. http://synt...genome curators to refine and edit annotations of species that have incomplete genome annotations. Sibelia...2603 days ago
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A guide for complete R beginners :- R Syntax
R is a functional based language, the inputs to a function, including options, are in brackets. Note that all dat and options are separated by a comma Function(data,...3351 days ago
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Bioinformatics PhD studentship available in New Zealand
...of transcriptional control has been explored in a burgeoning line of research over several decades; nevertheless, we are still far from having a complete picture of the regulatory mec...3941 days ago
Bioinformatics JRF at IISER MOHALI
...: Applicants are requested to send a cover letter outlining previous research experiences and reasons for joining this position. Please send your complete bio-data including the cover...3916 days ago
3502 days ago
What a bioinformatician always dream for ???
Well established bioinformatics labs with SGI(silicon graphics interface) License of all commercial softwares. Complete, and fully assembled genome of the girl :P A girl/boy...3838 days ago
TEDxCaltech - J. Craig Venter - Future Biology
J. Craig Venter is a biologist most known for his contributions, in 2001, of sequencing the first draft human genome and in 2007 for the first complete diploid human genome. In 2010 h...3856 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/...= {} for x in seqs: if 'gene-region' in x and x['gene-region'] == "complete": nm = x['accession']...1129 days ago
Blast script to index and extract sequence !!
...herichia coli O157:H7 str. EC4115 chromosome, complete genome. AGCTTTTCATTCTGACTGCA...herichia coli O157:H7 str. EC4115 chromosome, complete genome AGCTTTTCATTCTGACTGCAA...herichia coli O157:H7 str. EC4115 chromosome, complete genome TTAAAA2845 days ago
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Recovery of complete genomes from metagenomes
This project contains scripts and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarsh...Tags: Recovery, complete, genomes, metagenomes
2314 days ago
Digest: In silico restriction digest of complete genomes
This tool allows to retrieve number of cleavages yielded by commercially available endonucleases in up-to-date sequenced prokaryotic genomes. When the number of fragments is bellow 50, Pulse Field gel Electrophoresis (PFGE) is simulated. A tool for restriction digest of longuser's sequences...Tags: Digest, In silico, restriction, digest, complete, genomes
2176 days ago
Comment on "Basic command-line to run BLAST"
...This can be done online using the NCBI BLAST website or locally using the command-line interface. Interpret the results: After the search is complete, the results can be viewed an...416 days ago
Comment on "Setting up autoConTAMPR !"
...lding M/MI/MIYAGAWA/App-cpanminus-1.7044.tar.gzChecking if your kit is complete...Looks goodGenerating a Unix...Text::CSV_XS v.1.02, it makes Text::CSV faster.Checking if your kit is complete...Looks goodGenerating a Unix...1435 days ago