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List of bioinformatics workflow management tools !
...that are portable and scalable across a variety of software and hardware environments, from workstations to cluster, cloud, and high performance computing (HPC) environments. [ we...1157 days ago
List of bioinformatics packages for NGS analysis !
...data, including 1500+ software packages. [ paper-2004 | web ] Biopython – Freely available tools for biological computing in Python, with included cook...1157 days ago
Next Generation Sequencing (NGS) Tutorials
...performance analysis pipeline for whole-exome data http://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throu...3502 days ago
Bioinformatician stuck in wet-lab
...oinformaticians, and is meant to guide them towards better career development. 1. Make friends with local bioinformatics groups 2. Talk to your computing group 3. Obtain clear expecta...3666 days ago
Genome Assembly Tools and Software - PART2 !!
...is a novel de novo assembly framework which adapts to available computing resources by iteratively deco...shotgun reads and BAC or other localized reads. CGAL 0.9.6b – Computing Genome Assembly LikelihoodsCG...2700 days ago
Awesome perl frameworks, libraries and software - PART 3
...et support for the ngx_lua module (and OpenResty) jzawodn/mytop - a "top" clone for MySQL fonnesbeck/Bios8366 - Advanced Statistical Computing at Vanderbilt University's De...2509 days ago
3962 days ago
Bioinformatics Courses Around the World
...her names such as: computational biology, biocomputing, molecular informatics, compu...UK 2-3 days course introductory biocomputing course, 2000; 1999 ...nd algorithms in bioinformatics), BS5092 (biocomputing) (Uni de la) Mediterannee&nb...3958 days ago
4273π: Bioinformatics education on low cost ARM hardware
...new OS for the rescue. 4273π, an operating system image for Raspberry Pi based on Raspbian Linux. It provides an attractive, general-purpose computing environment, within which the...3913 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...load and therefore the ability to analyze is much beyond the existing computing capabilities. This tsunami of data has led to a sea change in the storage and computing requirements. In order to gea...3859 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...fifth international Clinical Genomics & Informatics Europe conference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-...3932 days ago
PostDocs positions in computer science in HELSINKI, FINLAND
...e learning, Data mining, Algorithms, Computational Logic, Cloud computing, Distributed computing, Human-centric ubiquitous ICT...a) Interactive visualization (HIIT-Wide Focus Area) Affective computing and BCI (HIIT-Wide Focus Area...3909 days ago
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3924 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
...es Description: The last two decades have seen an exponential increase in genomic and biomedical data, which will soon outstrip advances in computing power to perform current meth...3917 days ago
Mathematics for Computing : Huffman Code (Tree Approach)
Determining a Huffman code for a discrete memoryless source, using the Huffman Tree algorithm3894 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...$ sudo R [sudo] password for jit: R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gn...1565 days ago
Perl script to calculate the basic stats of the assembled genome !
...# Create Bio::SeqIO object to read the FASTA file my $seqio = Bio::SeqIO->new(-file => $input_file, -format => 'fasta'); # Variables for computing statistics my $total_length...109 days ago
3966 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on eac...Tags: Bioinformatics, DAGchainer, Computing, Chains, Syntenic, Genes, Genomes
2648 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and functions for the simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, ...Tags: DendroPy, Python, library, phylogenetic, computing
2219 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...f Mathematical Biology (1.846 :: 2.344) Journal of Computational Biology (1.737 :: 1.818) Medical & Biological Engineering & Computing (1.726 :: 2.005) Mathem...1119 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...f Mathematical Biology (1.846 :: 2.344) Journal of Computational Biology (1.737 :: 1.818) Medical & Biological Engineering & Computing (1.726 :: 2.005) Mathem...1857 days ago