Results for "contamination"
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BIMA V3: an aligner customized for mate pair library sequencing
...ost NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifacts (biotin junction reads, paired-end read contamination, chimeras, etc.), and presenc...2696 days ago
- ...assembly from 1,704 human gut samples formed 1,634 genome bins (>200kb) in 3 hours, where 621 genome bins are >50% complete with <5% contamination from other species. Further a...
2614 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA s...rt sequence fragments. They revealed a number of probable bacterial contaminations as well as hybrid scaffolds...2352 days ago
- ...ssessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of g...
2171 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
...ina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produc...1996 days ago
- ...o is a program to detect cross contamination events in assembled transcrip...f every transcripts.Such cross contaminations can be expected if several R...from the focal sample. cross contamination: the transcript origin is fro...pond to expectations for cross contaminations, but often reflect highly co...
1942 days ago
Predict Gene Ontology with sequences !
...karyotic proteomes in an hour. You can use AAI-profiler to summarize a proteome's species neighbors and reveal taxonomic identity or contamination. http://ekhidna2.biocenter.h...1394 days ago
- ...karyotic proteomes in an hour. You can use AAI-profiler to summarize a proteome's species neighbors and reveal taxonomic identity or contamination.
1358 days ago
- ...es. It creates a single linear representation of the mixed population on which intra-host variants can be mapped. For clinical samples rich in contamination (e.g., >95%), VICUNA can l...
1346 days ago
OMArk: software for proteome (protein-coding gene repertoire) quality assessment
...proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence of contamination from other species. OMArk rel...71 days ago
