Bioinformatics tools developed for Oxford Nanopore data analysis !
...l time analysis toolshttp://minotour.nottingham.ac.uk/ nanoCORRError-correction tool for nanopore sequence da...sequence datahttps://github.com/mitenjain/nanopore NanocorrectError-correction tool for nanopore sequence da...2319 days ago
CANU genome assembly parameters !
...tely of if we want to smash them together, we can alternate the error correction process. canu -p test_asmbl...rectedReads.fasta.gz : file containing the input sequences after correction, trim and split based on cons...1944 days ago
3233 days ago
2852 days ago
Genome Assembly Tools and Software - PART2 !!
...e system. AutoEditor 1.20 – Automated Correction of Genome Sequence ErrorsAuto...sequencing. It also provides tools for error correction, sequence-to-read alignment a...quencing reads. Quake adopts the k-mer error correction framework, first introduced b...2685 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...842, 2010. Publisher Website Data quality assessment, filtering, and correction SolexaQA: At-a-glance qualit...l [requires a reference sequence] Quake: quality-aware detection and correction of sequencing errors. Kelley...3778 days ago
Commercial and public next-gen-seq (NGS) software
...h Genome Sciences Centre. Perl/Linux. SOAPdenovo - Part of the SOAP suite. See above. VCAKE - De novo assembly of short reads with robust error correction. An improvement on early vers...3518 days ago
3828 days ago
Tadpole is 250x faster than SPADes assembler !
...pole.sh in= out= mode=extend Correction: tadpole.sh in= out= mode=correct Extension and correction may be done simultaneously....r error- correction or extension. reads=-1...a window, halt correction in that direction. qualsum=8...975 days ago
Comment on "Short-read assembly using Spades !"
...genome browser. SPAdes also provides several options for tuning the assembly parameters, such as adjusting the k-mer length or enabling error correction. The SPAdes manual provides d...420 days ago
Comment on "Sibelia: A comparative genomics tool"
..." will contain their coordinates, where N is the number of stage. Zero corresponds to blocks obtained without any simplification. Boundaries correction --------------------- Algor...1284 days ago